From ef839835ff1c067f4abbc853bfdbb471f52afbc5 Mon Sep 17 00:00:00 2001 From: Fersoil Date: Wed, 9 Oct 2024 13:10:54 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20mini-pw/?= =?UTF-8?q?PvSTATEM@9f289a6244df5a8f2711ebe97b09a486a4a88247=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- articles/example_script.html | 4 ++-- articles/our_datasets.html | 2 +- articles/our_plots.html | 2 +- authors.html | 2 +- news/index.html | 2 +- pkgdown.yml | 2 +- reference/Model.html | 2 +- reference/Plate.html | 2 +- reference/PlateBuilder.html | 2 +- reference/clamp.html | 2 +- reference/create_standard_curve_model_analyte.html | 2 +- reference/create_vector_without_holes.html | 2 +- reference/extract_dilution_from_names.html | 2 +- reference/extract_dilutions_from_layout.html | 2 +- reference/extract_sample_names_from_layout.html | 2 +- reference/get_join_value.html | 2 +- reference/is.scalar.html | 2 +- reference/is.str.number.html | 2 +- reference/is_outlier.html | 2 +- reference/is_valid_data_type.html | 2 +- reference/is_valid_sample_type.html | 2 +- reference/plot_counts.html | 2 +- reference/plot_layout.html | 2 +- reference/plot_mfi_for_analyte.html | 2 +- reference/plot_plate.html | 2 +- reference/plot_standard_curve_analyte.html | 2 +- reference/plot_standard_curve_analyte_with_model.html | 2 +- reference/predict.Model.html | 2 +- reference/process_plate.html | 4 ++-- reference/read_intelliflex_format.html | 2 +- reference/read_layout_data.html | 2 +- reference/read_luminex_data.html | 2 +- reference/read_xponent_format.html | 2 +- reference/remove_empty_lists.html | 2 +- reference/translate_sample_names_to_sample_types.html | 2 +- reference/verbose_cat.html | 2 +- reference/verify_character_join.html | 2 +- reference/verify_numeric_join.html | 2 +- 38 files changed, 40 insertions(+), 40 deletions(-) diff --git a/articles/example_script.html b/articles/example_script.html index b5d43660..15ba576a 100644 --- a/articles/example_script.html +++ b/articles/example_script.html @@ -102,7 +102,7 @@

Tymoteusz

2024-10-09

- Source: vignettes/example_script.Rmd + Source: vignettes/example_script.Rmd @@ -149,7 +149,7 @@

Processing the whole platetest_output_path <- file.path(tmp_dir, "output.csv") process_plate(plate, output_path = test_output_path) 
#> Fitting the models and computing the dilutions for each analyte
-
#> Saving the computed dilutions to a CSV file located in: '/tmp/RtmpAthoAh/output.csv'
+
#> Saving the computed dilutions to a CSV file located in: '/tmp/RtmpFBEKt5/output.csv'

Quality control and normalization details diff --git a/articles/our_datasets.html b/articles/our_datasets.html index bcf708f1..91fc3d81 100644 --- a/articles/our_datasets.html +++ b/articles/our_datasets.html @@ -102,7 +102,7 @@

Tymoteusz

2024-10-09

- Source: vignettes/our_datasets.Rmd + Source: vignettes/our_datasets.Rmd
diff --git a/articles/our_plots.html b/articles/our_plots.html index eec29365..7ce623cf 100644 --- a/articles/our_plots.html +++ b/articles/our_plots.html @@ -103,7 +103,7 @@

Mateusz

2024-10-09

- Source: vignettes/our_plots.Rmd + Source: vignettes/our_plots.Rmd diff --git a/authors.html b/authors.html index 4f54fbcb..12e60646 100644 --- a/authors.html +++ b/authors.html @@ -99,7 +99,7 @@

Authors and Citation

Citation

- Source: DESCRIPTION + Source: DESCRIPTION
diff --git a/news/index.html b/news/index.html index 075c3620..475eb80c 100644 --- a/news/index.html +++ b/news/index.html @@ -71,7 +71,7 @@

Changelog

- Source: NEWS.md + Source: NEWS.md
diff --git a/pkgdown.yml b/pkgdown.yml index b23dbbc6..cb8c5e3a 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -5,4 +5,4 @@ articles: example_script: example_script.html our_datasets: our_datasets.html our_plots: our_plots.html -last_built: 2024-10-09T12:57Z +last_built: 2024-10-09T13:10Z diff --git a/reference/Model.html b/reference/Model.html index cb8075f7..1d6c302e 100644 --- a/reference/Model.html +++ b/reference/Model.html @@ -83,7 +83,7 @@

Logistic regression model for the standard curve

- Source: R/classes-model.R + Source: R/classes-model.R
diff --git a/reference/Plate.html b/reference/Plate.html index fb343dbf..23338e06 100644 --- a/reference/Plate.html +++ b/reference/Plate.html @@ -73,7 +73,7 @@

Plate object

- Source: R/classes-plate.R + Source: R/classes-plate.R
diff --git a/reference/PlateBuilder.html b/reference/PlateBuilder.html index 4946cef1..89d8ec3b 100644 --- a/reference/PlateBuilder.html +++ b/reference/PlateBuilder.html @@ -72,7 +72,7 @@

PlateBuilder

- Source: R/classes-plate_builder.R + Source: R/classes-plate_builder.R
diff --git a/reference/clamp.html b/reference/clamp.html index 80f60ef5..1605587c 100644 --- a/reference/clamp.html +++ b/reference/clamp.html @@ -71,7 +71,7 @@

Clamp a value to a range

- Source: R/helpers.R + Source: R/helpers.R
diff --git a/reference/create_standard_curve_model_analyte.html b/reference/create_standard_curve_model_analyte.html index 8d821e9e..0f5c00bd 100644 --- a/reference/create_standard_curve_model_analyte.html +++ b/reference/create_standard_curve_model_analyte.html @@ -71,7 +71,7 @@

Create a standard curve model for a certain analyte

- Source: R/classes-model.R + Source: R/classes-model.R
diff --git a/reference/create_vector_without_holes.html b/reference/create_vector_without_holes.html index 368a3bea..686e7a16 100644 --- a/reference/create_vector_without_holes.html +++ b/reference/create_vector_without_holes.html @@ -72,7 +72,7 @@

Remove holes from a vector

- Source: R/plots-plate.R + Source: R/plots-plate.R
diff --git a/reference/extract_dilution_from_names.html b/reference/extract_dilution_from_names.html index ba49bb5e..0cb5c5ff 100644 --- a/reference/extract_dilution_from_names.html +++ b/reference/extract_dilution_from_names.html @@ -72,7 +72,7 @@

Extract dilution factor from the sample name

- Source: R/classes-plate_builder.R + Source: R/classes-plate_builder.R
diff --git a/reference/extract_dilutions_from_layout.html b/reference/extract_dilutions_from_layout.html index be0c4a23..f28ba71d 100644 --- a/reference/extract_dilutions_from_layout.html +++ b/reference/extract_dilutions_from_layout.html @@ -72,7 +72,7 @@

Extract dilutions from the layout representation

- Source: R/classes-plate_builder.R + Source: R/classes-plate_builder.R
diff --git a/reference/extract_sample_names_from_layout.html b/reference/extract_sample_names_from_layout.html index 6be168c7..5a16c75d 100644 --- a/reference/extract_sample_names_from_layout.html +++ b/reference/extract_sample_names_from_layout.html @@ -73,7 +73,7 @@

Extract sample names from layout

- Source: R/classes-plate_builder.R + Source: R/classes-plate_builder.R
diff --git a/reference/get_join_value.html b/reference/get_join_value.html index a61ca1ed..8aa2b6bc 100644 --- a/reference/get_join_value.html +++ b/reference/get_join_value.html @@ -71,7 +71,7 @@

Determine the Join Value

- Source: R/helpers.R + Source: R/helpers.R
diff --git a/reference/is.scalar.html b/reference/is.scalar.html index 96020d60..ab1a53ee 100644 --- a/reference/is.scalar.html +++ b/reference/is.scalar.html @@ -71,7 +71,7 @@

Check if a value is a scalar

- Source: R/helpers.R + Source: R/helpers.R
diff --git a/reference/is.str.number.html b/reference/is.str.number.html index 65bc0db2..155dd92d 100644 --- a/reference/is.str.number.html +++ b/reference/is.str.number.html @@ -71,7 +71,7 @@

Check if a string is a number

- Source: R/helpers.R + Source: R/helpers.R
diff --git a/reference/is_outlier.html b/reference/is_outlier.html index a1da2c73..250a56cb 100644 --- a/reference/is_outlier.html +++ b/reference/is_outlier.html @@ -71,7 +71,7 @@

Check if a value is an outlier

- Source: R/helpers.R + Source: R/helpers.R
diff --git a/reference/is_valid_data_type.html b/reference/is_valid_data_type.html index 316c2b31..934f9eca 100644 --- a/reference/is_valid_data_type.html +++ b/reference/is_valid_data_type.html @@ -73,7 +73,7 @@

Check validity of given data type

- Source: R/classes-plate.R + Source: R/classes-plate.R
diff --git a/reference/is_valid_sample_type.html b/reference/is_valid_sample_type.html index c3e4aee6..629ee489 100644 --- a/reference/is_valid_sample_type.html +++ b/reference/is_valid_sample_type.html @@ -73,7 +73,7 @@

Check validity of given sample type

- Source: R/classes-plate.R + Source: R/classes-plate.R
diff --git a/reference/plot_counts.html b/reference/plot_counts.html index d69493f4..6322839c 100644 --- a/reference/plot_counts.html +++ b/reference/plot_counts.html @@ -74,7 +74,7 @@

Plot counts in a 96-well plate

- Source: R/plots-plate.R + Source: R/plots-plate.R
diff --git a/reference/plot_layout.html b/reference/plot_layout.html index 55bbfec3..1e1d23d2 100644 --- a/reference/plot_layout.html +++ b/reference/plot_layout.html @@ -73,7 +73,7 @@

Plot layout of a 96-well plate

- Source: R/plots-plate.R + Source: R/plots-plate.R
diff --git a/reference/plot_mfi_for_analyte.html b/reference/plot_mfi_for_analyte.html index 6213a203..ac9d5dcd 100644 --- a/reference/plot_mfi_for_analyte.html +++ b/reference/plot_mfi_for_analyte.html @@ -71,7 +71,7 @@

Plot MFI value distribution for a given analyte

- Source: R/plots-mfi.R + Source: R/plots-mfi.R
diff --git a/reference/plot_plate.html b/reference/plot_plate.html index 4b6a9d1c..d3389217 100644 --- a/reference/plot_plate.html +++ b/reference/plot_plate.html @@ -76,7 +76,7 @@

Plot a 96-well plate with colored wells

- Source: R/plots-plate.R + Source: R/plots-plate.R
diff --git a/reference/plot_standard_curve_analyte.html b/reference/plot_standard_curve_analyte.html index 1a1a2ca6..7445aad0 100644 --- a/reference/plot_standard_curve_analyte.html +++ b/reference/plot_standard_curve_analyte.html @@ -71,7 +71,7 @@

Standard curves

- Source: R/plots-standard_curve.R + Source: R/plots-standard_curve.R
diff --git a/reference/plot_standard_curve_analyte_with_model.html b/reference/plot_standard_curve_analyte_with_model.html index f02b1119..aa5d4f97 100644 --- a/reference/plot_standard_curve_analyte_with_model.html +++ b/reference/plot_standard_curve_analyte_with_model.html @@ -71,7 +71,7 @@

Plot standard curve of a certain analyte with fitted model

- Source: R/plots-standard_curve.R + Source: R/plots-standard_curve.R
diff --git a/reference/predict.Model.html b/reference/predict.Model.html index 8384a95c..00b8024b 100644 --- a/reference/predict.Model.html +++ b/reference/predict.Model.html @@ -71,7 +71,7 @@

Predict the dilutions from the MFI values

- Source: R/classes-model.R + Source: R/classes-model.R
diff --git a/reference/process_plate.html b/reference/process_plate.html index 8cb750b2..aaedca0f 100644 --- a/reference/process_plate.html +++ b/reference/process_plate.html @@ -78,7 +78,7 @@

Process a plate and save computed dilutions to a CSV

- Source: R/process-plate.R + Source: R/process-plate.R
@@ -161,7 +161,7 @@

Examples

#> These values have been replaced by the maximal possible value the model can estimate. #> Warning: One (or more) of the values were greater or equal to the estimated top asymptote. #> These values have been replaced by the maximal possible value the model can estimate. -#> Saving the computed dilutions to a CSV file located in: '/tmp/RtmpRwJRrV/output.csv' +#> Saving the computed dilutions to a CSV file located in: '/tmp/RtmpexX58j/output.csv' # create and save dataframe with computed dilutions
diff --git a/reference/read_intelliflex_format.html b/reference/read_intelliflex_format.html index 16c4aee5..36864712 100644 --- a/reference/read_intelliflex_format.html +++ b/reference/read_intelliflex_format.html @@ -71,7 +71,7 @@

Read the Intelliflex format data

- Source: R/parser-intelliflex.R + Source: R/parser-intelliflex.R
diff --git a/reference/read_layout_data.html b/reference/read_layout_data.html index 15c5575e..ca83c5d6 100644 --- a/reference/read_layout_data.html +++ b/reference/read_layout_data.html @@ -71,7 +71,7 @@

Read layout data from a file

- Source: R/parser-layout.R + Source: R/parser-layout.R
diff --git a/reference/read_luminex_data.html b/reference/read_luminex_data.html index 3630eaa9..d03e79b3 100644 --- a/reference/read_luminex_data.html +++ b/reference/read_luminex_data.html @@ -79,7 +79,7 @@

Read Luminex Data

- Source: R/parser.R + Source: R/parser.R
diff --git a/reference/read_xponent_format.html b/reference/read_xponent_format.html index f42aa4b2..c6db4d07 100644 --- a/reference/read_xponent_format.html +++ b/reference/read_xponent_format.html @@ -71,7 +71,7 @@

Read the xPONENT format data

- Source: R/parser-xponent.R + Source: R/parser-xponent.R
diff --git a/reference/remove_empty_lists.html b/reference/remove_empty_lists.html index edd07256..7c140b0c 100644 --- a/reference/remove_empty_lists.html +++ b/reference/remove_empty_lists.html @@ -71,7 +71,7 @@

Remove Empty Lists from a List

- Source: R/helpers.R + Source: R/helpers.R
diff --git a/reference/translate_sample_names_to_sample_types.html b/reference/translate_sample_names_to_sample_types.html index cbe8bc41..d75b4b87 100644 --- a/reference/translate_sample_names_to_sample_types.html +++ b/reference/translate_sample_names_to_sample_types.html @@ -86,7 +86,7 @@

Translate sample names to sample types

- Source: R/classes-plate_builder.R + Source: R/classes-plate_builder.R
diff --git a/reference/verbose_cat.html b/reference/verbose_cat.html index af3cca5c..da9bf94f 100644 --- a/reference/verbose_cat.html +++ b/reference/verbose_cat.html @@ -71,7 +71,7 @@

Verbose Cat

- Source: R/helpers.R + Source: R/helpers.R
diff --git a/reference/verify_character_join.html b/reference/verify_character_join.html index dc3c2e27..16b8093e 100644 --- a/reference/verify_character_join.html +++ b/reference/verify_character_join.html @@ -71,7 +71,7 @@

Verify Character Join

- Source: R/helpers.R + Source: R/helpers.R
diff --git a/reference/verify_numeric_join.html b/reference/verify_numeric_join.html index 323d2591..1f6a4a1a 100644 --- a/reference/verify_numeric_join.html +++ b/reference/verify_numeric_join.html @@ -71,7 +71,7 @@

Verify Numeric Join

- Source: R/helpers.R + Source: R/helpers.R