From 437b1b863b32c80fbc7c86c37b90cb82edb30fb7 Mon Sep 17 00:00:00 2001
From: Eva Hamrud <50098063+evaham1@users.noreply.github.com>
Date: Tue, 24 Sep 2024 14:26:32 +1000
Subject: [PATCH] debug: comment out install system dependencies using
 'sysreqs' as this API no longer works

---
 .github/workflows/actions.yml | 21 +++++++++------------
 1 file changed, 9 insertions(+), 12 deletions(-)

diff --git a/.github/workflows/actions.yml b/.github/workflows/actions.yml
index 5c0ceca7..24a42b8f 100644
--- a/.github/workflows/actions.yml
+++ b/.github/workflows/actions.yml
@@ -124,18 +124,15 @@ jobs:
           key: ${{ runner.os }}-r-${{ matrix.config.r }}-bioc-${{ matrix.config.bioc }}-${{ hashFiles('depends.Rds') }}
           restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-bioc-${{ matrix.config.bioc }}-
 
-      - name: Update CA Certificates
-        run: sudo apt-get update && sudo apt-get install -y ca-certificates
-
-      - name: Install system dependencies 🔧
-        if: runner.os == 'Linux'
-        env:
-          RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
-        run: |
-          Rscript -e "remotes::install_github('r-hub/sysreqs')"
-          sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
-          sudo -s eval "$sysreqs"
-          sudo apt-get update && sudo apt-get -y install libcurl4-openssl-dev
+      # - name: Install system dependencies 🔧
+      #   if: runner.os == 'Linux'
+      #   env:
+      #     RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
+      #   run: |
+      #     Rscript -e "remotes::install_github('r-hub/sysreqs')"
+      #     sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
+      #     sudo -s eval "$sysreqs"
+      #     sudo apt-get update && sudo apt-get -y install libcurl4-openssl-dev
 
       - name: Install dependencies 🔨
         run: |