.gitignore

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class
*.ipynb*
build/
dist/
pyinseq.egg-info/
.eggs/
.pytest_cache/

# Local Environment
.env/

# Mac
.DS_Store

# Input data files for experiment
private/

# Contents in results directory
results/*

# Test and coverage
.cache
.coverage

# MkDocs builds
site/

# Directory cruft
.DS_Store
**/.DS_Store


###################################
# Below modified from https://github.com/github/gitignore/blob/master/Global/JetBrains.gitignore
###################################

# Covers JetBrains IDEs: IntelliJ, RubyMine, PhpStorm, AppCode, PyCharm, CLion, Android Studio and WebStorm
# Reference: https://intellij-support.jetbrains.com/hc/en-us/articles/206544839

# User-specific stuff
.idea/**/workspace.xml
.idea/**/tasks.xml
.idea/**/usage.statistics.xml
.idea/**/dictionaries
.idea/**/shelf

# Generated files
.idea/**/contentModel.xml
.idea/**/markdown-exported-files.xml

# Sensitive or high-churn files
.idea/**/dataSources/
.idea/**/dataSources.ids
.idea/**/dataSources.local.xml
.idea/**/sqlDataSources.xml
.idea/**/dynamic.xml
.idea/**/uiDesigner.xml
.idea/**/dbnavigator.xml

# Gradle
.idea/**/gradle.xml
.idea/**/libraries

# Gradle and Maven with auto-import
# When using Gradle or Maven with auto-import, you should exclude module files,
# since they will be recreated, and may cause churn.  Uncomment if using
# auto-import.
# .idea/modules.xml
# .idea/*.iml
# .idea/modules

# CMake
cmake-build-*/

# Mongo Explorer plugin
.idea/**/mongoSettings.xml

# File-based project format
*.iws

# IntelliJ
out/

# mpeltonen/sbt-idea plugin
.idea_modules/

# JIRA plugin
atlassian-ide-plugin.xml

# Cursive Clojure plugin
.idea/replstate.xml

# Crashlytics plugin (for Android Studio and IntelliJ)
com_crashlytics_export_strings.xml
crashlytics.properties
crashlytics-build.properties
fabric.properties

# Editor-based Rest Client
.idea/httpRequestssite/

# Visual Studio IDE 
\.idea/misc\.xml
\.idea/pyinseq\.iml
\.idea/codeStyles/codeStyleConfig\.xml
\.idea/codeStyles/Project\.xml
\.vscode/settings\.json
pyinseq/.idea/*