install_r_deps.sh

#!/usr/bin/sh
apt-get -yqq update
apt-get -yqq install gnupg2 ca-certificates

# add CRAN to apt sources
apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
printf '\n#CRAN mirror\ndeb https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/\n' | tee -a /etc/apt/sources.list

# update apt
apt-get -y update
apt-get -y upgrade

# requisites for RStudio
apt-get -y install gdebi-core

# requisites for different R packages
# this aims at covering as much packages as possible
# see https://packagemanager.rstudio.com/client/#/repos/1/overview
# and also
# https://geocompr.github.io/post/2020/installing-r-spatial-ubuntu/
# http://dirk.eddelbuettel.com/blog/2020/06/22#027_ubuntu_binaries
# this a broad, general setup, no fine detail here
apt-get -y install software-properties-common libopenblas-dev libsodium-dev texlive default-jdk

# saw error about this during install - MP
# this is for pkgdown
apt-get -y install \
	libharfbuzz-dev \
	libfribidi-dev \
	libfreetype6-dev \
	libpng-dev \
	libtiff5-dev \
	libjpeg-dev

# required to install rshiny / rstudio:
apt-get install wget

add-apt-repository -y ppa:c2d4u.team/c2d4u4.0+

apt-get -qq purge
apt-get -qq clean
rm -rf /var/lib/apt/lists/*