_pkgdown.yml

reference:
- title: Package Help
  desc: Provides an overview of key functions and classes
  contents:
  - catmaid-package
- title: Catmaid Login
  desc: Functions handling connections to a catmaid server
  contents:
  - catmaid_login
  - catmaid_connection_setenv
- title: CATMAID skeleton functions
  desc: Fetching raw skeleton information
  contents:
  - catmaid_get_compact_skeleton
  - catmaid_get_treenode_table
  - catmaid_get_review_status
- title: Names and Annotations
  desc: Querying, fetching and setting neuron names and annotations
  contents:
  - catmaid_query_by_name
  - catmaid_get_neuronnames
  - catmaid_rename_neuron
  - catmaid_skids
  - catmaid_get_annotations_for_skeletons
  - catmaid_get_annotationlist
- title: Synaptic Connections
  desc: Querying and fetching neuronal connectivity information
  contents:
  - catmaid_query_connected
  - catmaid_get_connector_table
  - catmaid_get_connectors_between
  - catmaid_get_connectors
- title: Interfacing with Nat
  desc: Fetching and using catmaid skeletons for use with the NeuroAnatomy Toolbox (nat) package.
  contents:
  - read.neuron.catmaid
  - plot3d.catmaidneuron
  - connectors
- title: Handling volume meshes
  desc: Adding / converting volume meshes to CATMAID from regular R mesh representations
  contents:
  - as.catmaidmesh
  - catmaid_add_volume
- title: CATMAID statistics and users
  desc: Neuron and user lists and statistics
  contents:
  - catmaid_get_contributor_stats
  - catmaid_get_user_list
  - catmaid_user_history
- title: CATMAID URLs
  desc: Working with the URLs or json files used to save and exchange CATMAID state
  contents:
  - catmaid_parse_url
- title: Low level functions
  desc: Functions primarily intended for developer use
  contents:
  - catmaid_fetch
  - catmaid_entities_from_models
  - catmaid_version