From b48aefd9d4fba7477055a9e8c076de63ef1ab0f3 Mon Sep 17 00:00:00 2001 From: Matthew McDermott Date: Sat, 15 Jun 2024 14:32:58 -0400 Subject: [PATCH] Fixed lint issues. --- MIMIC-IV_Example/README.md | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/MIMIC-IV_Example/README.md b/MIMIC-IV_Example/README.md index 56821de..0f9ffed 100644 --- a/MIMIC-IV_Example/README.md +++ b/MIMIC-IV_Example/README.md @@ -251,14 +251,16 @@ mbm47 in  compute-a-17-72 in MEDS_polars_functions on  preprocessing_steps ``` 8. Fit vocabulary: + ```bash -mbm47 in  compute-e-16-230 in MEDS_polars_functions on  preprocessing_steps [$] is 󰏗 v0.0.1 via  v3.12.3 via  MEDS_pipelines took 2s +mbm47 in  compute-e-16-230 in MEDS_polars_functions on  preprocessing_steps [$] is 󰏗 v0.0.1 via  v3.12.3 via  MEDS_pipelines took 2s ❯ ./scripts/preprocessing/fit_vocabulary_indices.py input_dir="$MIMICIV_MEDS_DIR/3workers_slurm" cohort_dir="$MIMICIV_MEDS_PROC_DIR/test" code_modifier_columns=null ``` 9. Normalize: + ```bash -mbm47 in  compute-e-16-230 in MEDS_polars_functions on  preprocessing_steps [$] is 󰏗 v0.0.1 via  v3.12.3 via  MEDS_pipelines took 4s +mbm47 in  compute-e-16-230 in MEDS_polars_functions on  preprocessing_steps [$] is 󰏗 v0.0.1 via  v3.12.3 via  MEDS_pipelines took 4s ❯ ./scripts/preprocessing/normalize.py --multirun worker="range(0,3)" hydra/launcher=joblib input_dir="$MIMICIV_MEDS_DIR/3workers_slurm" cohort_dir="$MIMICIV_MEDS_PROC_DIR/test" code_modifie r_columns=null ```