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Installation Guide

1. get the latest version of the code from http://github.com/mnarizzano/SEEGA

2. Open 3DSlicer and go to Edit > Application Settings > Modules.

3. Expand the box "Additional module paths:" by clicking the arrow on the right side. This shows the Add and Remove buttons

4. Click Add and navigate to the directory where you downloaded the SEEGA working copy. 4a. Choose the directory of each module separatelly i.e. Contact Position Estimator; Brain Zone Detector; GMPI Estimator.

5. After adding each module, Click Apply. Slicer wants to be reloaded.

6. After reloading the modules should be listed under the "Modules:" list.

7. Depending on your platform (e.g. Macos, Linux or Windows) you should modify the configuration file. This file is located under ContactPositionEstimator/Config/. There you'll find 2 configuration files. The former is deeto.config that contains a the path to the stand-alone version of the segmentation algorithm (ie DEETO). This needs to be modified in order to point to the correct version of the exectuable for your platform. Possible values are

8. {"deeto":"DeetoS/deeto-static-linux64"} => default value

9. {"deeto":"DeetoS/deeto-macos-static"} => use this for mac os

10. {"deeto":"DeetoS/deeto-winx64-static-vs2015.exe"} => use this for windows

Replace the default line with the correct one for your platform.

The latter configuration file is called electrodes.config where electrode models are listed. For the moment only DIXI are included by default. You can include your own model ( if different from those included ) by simply appending the requested information. That file contains one line for each electrode model following :

"Name": [nContacts, ontactLenght, contactDiameter, interContactDistance 1-2,interContactDistance 2-3, interContactDistance 3-4,interContactDistance 4-5]

8. Restart 3DSlicer