diff --git a/modules/preparePanelCaptureTmpDirs.wdl b/modules/preparePanelCaptureTmpDirs.wdl index 5359bfd..81ee10b 100644 --- a/modules/preparePanelCaptureTmpDirs.wdl +++ b/modules/preparePanelCaptureTmpDirs.wdl @@ -78,7 +78,7 @@ task preparePanelCaptureTmpDirs { File workflowTypeDir = "~{OutDir}~{SampleID}/~{WorkflowType}" File recalTablesDir = "~{OutDir}~{SampleID}/~{WorkflowType}/recal_tables" File splittedIntervalsDir = "~{OutDir}~{SampleID}/~{WorkflowType}/splitted_intervals" - File recalBamsDir = "~{OutDir}~{SampleID}/~{WorkflowType}/recal_bams" + # File recalBamsDir = "~{OutDir}~{SampleID}/~{WorkflowType}/recal_bams" File vcfDir = "~{OutDir}~{SampleID}/~{WorkflowType}/vcfs" } }