From 69060c386fe8421c5b87817c5841741a7f149db4 Mon Sep 17 00:00:00 2001 From: vidboda Date: Thu, 26 Sep 2024 18:10:04 +0200 Subject: [PATCH] descattered recalbams & leftalign --- modules/preparePanelCaptureTmpDirs.wdl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/preparePanelCaptureTmpDirs.wdl b/modules/preparePanelCaptureTmpDirs.wdl index 5359bfd..81ee10b 100644 --- a/modules/preparePanelCaptureTmpDirs.wdl +++ b/modules/preparePanelCaptureTmpDirs.wdl @@ -78,7 +78,7 @@ task preparePanelCaptureTmpDirs { File workflowTypeDir = "~{OutDir}~{SampleID}/~{WorkflowType}" File recalTablesDir = "~{OutDir}~{SampleID}/~{WorkflowType}/recal_tables" File splittedIntervalsDir = "~{OutDir}~{SampleID}/~{WorkflowType}/splitted_intervals" - File recalBamsDir = "~{OutDir}~{SampleID}/~{WorkflowType}/recal_bams" + # File recalBamsDir = "~{OutDir}~{SampleID}/~{WorkflowType}/recal_bams" File vcfDir = "~{OutDir}~{SampleID}/~{WorkflowType}/vcfs" } }