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FEAT-#1285: Add sem implementation for Series and DataFrame #2048

Merged
merged 1 commit into from
Sep 9, 2020
Merged

FEAT-#1285: Add sem implementation for Series and DataFrame #2048

merged 1 commit into from
Sep 9, 2020

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YarShev
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@YarShev YarShev commented Sep 8, 2020

Signed-off-by: Igoshev, Yaroslav yaroslav.igoshev@intel.com

What do these changes do?

  • commit message follows format outlined here
  • passes flake8 modin
  • passes black --check modin
  • signed commit with git commit -s
  • Resolves sem function implementation #1285
  • tests added and passing

@YarShev YarShev self-assigned this Sep 8, 2020
@YarShev YarShev force-pushed the dev/yigoshev-sem branch 2 times, most recently from 62b03d9 to 3a55bfb Compare September 8, 2020 09:21
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modin-bot commented Sep 8, 2020 •
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TeamCity Python test results bot

Tests PASSed

Tests Logs 
============================= test session starts ==============================
platform linux -- Python 3.7.7, pytest-6.0.1, py-1.9.0, pluggy-0.13.1
rootdir: /modin, configfile: setup.cfg
plugins: openfiles-0.5.0, remotedata-0.3.2, cov-2.10.1, forked-1.3.0, xdist-2.1.0
collected 113 items

modin/pandas/test/test_io.py .................sX..........s............. [ 38%]
........s...........................s..s.X.....s..................ss..   [100%]

----------- coverage: platform linux, python 3.7.7-final-0 -----------
Coverage XML written to file coverage.xml


=========== 103 passed, 8 skipped, 2 xpassed, 151 warnings in 44.45s ===========
Closing remaining open files:test_write_pandas.hdf...donetest_write_modin.hdf...done
============================= test session starts ==============================
platform linux -- Python 3.7.7, pytest-6.0.1, py-1.9.0, pluggy-0.13.1
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----------- coverage: platform linux, python 3.7.7-final-0 -----------
Coverage XML written to file coverage.xml

== 5002 passed, 69 skipped, 176 xfailed, 152 xpassed, 9563 warnings in 54.40s ==
============================= test session starts ==============================
platform linux -- Python 3.7.7, pytest-6.0.1, py-1.9.0, pluggy-0.13.1
rootdir: /modin, configfile: setup.cfg
plugins: openfiles-0.5.0, remotedata-0.3.2, cov-2.10.1, forked-1.3.0, xdist-2.1.0
collected 113 items

modin/pandas/test/test_io.py .................sX..........s............. [ 38%]
........s...........................s..s.X.....s..................ss..   [100%]

----------- coverage: platform linux, python 3.7.7-final-0 -----------
Coverage XML written to file coverage.xml


=========== 103 passed, 8 skipped, 2 xpassed, 151 warnings in 44.45s ===========
Closing remaining open files:test_write_pandas.hdf...donetest_write_modin.hdf...done
============================= test session starts ==============================
platform linux -- Python 3.7.7, pytest-6.0.1, py-1.9.0, pluggy-0.13.1
rootdir: /modin, configfile: setup.cfg
plugins: openfiles-0.5.0, remotedata-0.3.2, cov-2.10.1, forked-1.3.0, xdist-2.1.0
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----------- coverage: platform linux, python 3.7.7-final-0 -----------
Coverage XML written to file coverage.xml

== 5002 passed, 69 skipped, 176 xfailed, 152 xpassed, 9563 warnings in 54.40s ==

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modin-bot commented Sep 8, 2020 •
edited
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TeamCity Ray test results bot

Tests PASSed

Tests Logs 
============================= test session starts ==============================
platform linux -- Python 3.7.7, pytest-6.0.1, py-1.9.0, pluggy-0.13.1
rootdir: /modin, configfile: setup.cfg
plugins: openfiles-0.5.0, remotedata-0.3.2, cov-2.10.1, forked-1.3.0, xdist-2.1.0
collected 113 items

modin/pandas/test/test_io.py .................sx..........s............. [ 38%]
....................................s..s.X.....s..................ss..   [100%]

----------- coverage: platform linux, python 3.7.7-final-0 -----------
Coverage XML written to file coverage.xml


= 104 passed, 7 skipped, 1 xfailed, 1 xpassed, 105 warnings in 91.19s (0:01:31) =
Closing remaining open files:test_write_modin.hdf...donetest_write_pandas.hdf...done
============================= test session starts ==============================
platform linux -- Python 3.7.7, pytest-6.0.1, py-1.9.0, pluggy-0.13.1
rootdir: /modin, configfile: setup.cfg
plugins: openfiles-0.5.0, remotedata-0.3.2, cov-2.10.1, forked-1.3.0, xdist-2.1.0
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[gw16] node down: Not properly terminated

replacing crashed worker gw16
[gw28] node down: Not properly terminated

replacing crashed worker gw28
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.�[2m�[36m(pid=8928)�[0m error: object directory /localdisk/tc_agent/system/git/git-CE4319E5.git/objects does not exist; check .git/objects/info/alternates.
�[2m�[36m(pid=8928)�[0m fatal: bad object HEAD
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�[2m�[36m(pid=9638)�[0m fatal: bad object HEAD
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............................................xx.......�[2m�[36m(pid=9769)�[0m error: object directory /localdisk/tc_agent/system/git/git-CE4319E5.git/objects does not exist; check .git/objects/info/alternates.
�[2m�[36m(pid=9769)�[0m fatal: bad object HEAD
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....X.......X..X�[2m�[36m(pid=10202)�[0m error: object directory /localdisk/tc_agent/system/git/git-CE4319E5.git/objects does not exist; check .git/objects/info/alternates.
�[2m�[36m(pid=10202)�[0m fatal: bad object HEAD
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Xx...x..X.x...x........................X..xX...................x...X.... [ 90%]
.......X......x.....................X..........................X.......x. [ 92%]
...............x.....................................................x.. [ 93%]
....................x..x.xx.......x...........x.............xx.......... [ 94%]
.X..x.....x............x...x...x...xx.........x......................... [ 96%]
......x...x............................................................. [ 97%]
........................................................................ [ 98%]
............ss...........................................                [100%]

----------- coverage: platform linux, python 3.7.7-final-0 -----------
---------------------- coverage: failed workers ----------------------
The following workers failed to return coverage data, ensure that pytest-cov is installed on these workers.
gw16
gw28
Coverage XML written to file coverage.xml

= 5002 passed, 69 skipped, 176 xfailed, 152 xpassed, 9414 warnings in 91.48s (0:01:31) =
============================= test session starts ==============================
platform linux -- Python 3.7.7, pytest-6.0.1, py-1.9.0, pluggy-0.13.1
rootdir: /modin, configfile: setup.cfg
plugins: openfiles-0.5.0, remotedata-0.3.2, cov-2.10.1, forked-1.3.0, xdist-2.1.0
collected 113 items

modin/pandas/test/test_io.py .................sx..........s............. [ 38%]
....................................s..s.X.....s..................ss..   [100%]

----------- coverage: platform linux, python 3.7.7-final-0 -----------
Coverage XML written to file coverage.xml


= 104 passed, 7 skipped, 1 xfailed, 1 xpassed, 105 warnings in 91.19s (0:01:31) =
Closing remaining open files:test_write_modin.hdf...donetest_write_pandas.hdf...done
============================= test session starts ==============================
platform linux -- Python 3.7.7, pytest-6.0.1, py-1.9.0, pluggy-0.13.1
rootdir: /modin, configfile: setup.cfg
plugins: openfiles-0.5.0, remotedata-0.3.2, cov-2.10.1, forked-1.3.0, xdist-2.1.0
gw0 I / gw1 I / gw2 I / gw3 I / gw4 I / gw5 I / gw6 I / gw7 I / gw8 I / gw9 I / gw10 I / gw11 I / gw12 I / gw13 I / gw14 I / gw15 I / gw16 I / gw17 I / gw18 I / gw19 I / gw20 I / gw21 I / gw22 I / gw23 I / gw24 I / gw25 I / gw26 I / gw27 I / gw28 I / gw29 I / gw30 I / gw31 I / gw32 I / gw33 I / gw34 I / gw35 I / gw36 I / gw37 I / gw38 I / gw39 I / gw40 I / gw41 I / gw42 I / gw43 I / gw44 I / gw45 I / gw46 I / gw47 I
[gw16] node down: Not properly terminated

replacing crashed worker gw16
[gw28] node down: Not properly terminated

replacing crashed worker gw28
gw0 [5399] / gw1 [5399] / gw2 [5399] / gw3 [5399] / gw4 [5399] / gw5 [5399] / gw6 [5399] / gw7 [5399] / gw8 [5399] / gw9 [5399] / gw10 [5399] / gw11 [5399] / gw12 [5399] / gw13 [5399] / gw14 [5399] / gw15 [5399] / gw48 [5399] / gw17 [5399] / gw18 [5399] / gw19 [5399] / gw20 [5399] / gw21 [5399] / gw22 [5399] / gw23 [5399] / gw24 [5399] / gw25 [5399] / gw26 [5399] / gw27 [5399] / gw49 [5399] / gw29 [5399] / gw30 [5399] / gw31 [5399] / gw32 [5399] / gw33 [5399] / gw34 [5399] / gw35 [5399] / gw36 [5399] / gw37 [5399] / gw38 [5399] / gw39 [5399] / gw40 [5399] / gw41 [5399] / gw42 [5399] / gw43 [5399] / gw44 [5399] / gw45 [5399] / gw46 [5399] / gw47 [5399]

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..x........................s......................................x..... [  9%]
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............x...........................X..sx.........................x. [ 12%]
.�[2m�[36m(pid=8928)�[0m error: object directory /localdisk/tc_agent/system/git/git-CE4319E5.git/objects does not exist; check .git/objects/info/alternates.
�[2m�[36m(pid=8928)�[0m fatal: bad object HEAD
...............................x....x.......................x.....x..... [ 13%]
..X.....X..X..X.XX.X......X...X..X............x..............X.......X.x [ 14%]
XX.xx..........x.............x...x........x.....x....x.................. [ 16%]
...................................x.................................... [ 17%]
.............x..........x..x............x..............................x [ 18%]
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.........XX...................x..........xXx...X.....X.....X.....XXX.... [ 26%]
...............x..X............X.......X................................ [ 28%]
...x...................................xx.........�[2m�[36m(pid=9638)�[0m error: object directory /localdisk/tc_agent/system/git/git-CE4319E5.git/objects does not exist; check .git/objects/info/alternates..
�[2m�[36m(pid=9638)�[0m fatal: bad object HEAD
..........x.......... [ 29%]
..............x........xx.........X...............................x..... [ 30%]
...............................................x..........x............. [ 32%]
...............X......x.......xX.....XXX......X.......X.X................ [ 33%]
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sssss.s..sss..ss..ssss.ssssssss......................................... [ 48%]
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.................................xx..................................... [ 52%]
.........................................x......�[2m�[36m(pid=5325)�[0m RuntimeWarning: overflow encountered in reduce
...................xx... [ 53%]
........................................................................ [ 54%]
............................................xx.......�[2m�[36m(pid=9769)�[0m error: object directory /localdisk/tc_agent/system/git/git-CE4319E5.git/objects does not exist; check .git/objects/info/alternates.
�[2m�[36m(pid=9769)�[0m fatal: bad object HEAD
................... [ 56%]
.....................x.................................................. [ 57%]
............................x........x..........................X....... [ 58%]
..........................................................x.............. [ 60%]
.x..x..............x.....x....x.x.X......x.....x..........x.x..........X. [ 61%]
.XX.XX...x......xx.X..X.X.x...x.............x..........x................ [ 62%]
.......x..X.s.X..X..X..X..X.........x.x.......x..x.........x..........x. [ 64%]
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..s.....x...............s.........s......s.................sx.........x.. [ 77%]
.s.....s..x....x.x..........x.x...........xs.....xxx..............xX...X [ 78%]
.X....X...s.........s...........x......................s.....s...x...... [ 80%]
....X.......X..X�[2m�[36m(pid=10202)�[0m error: object directory /localdisk/tc_agent/system/git/git-CE4319E5.git/objects does not exist; check .git/objects/info/alternates.
�[2m�[36m(pid=10202)�[0m fatal: bad object HEAD
....s..s.X....X.....X.X.....X.........X..X..X...x..X.X.. [ 81%]
X..XX.....X.....X..X........X...X..sX.....X......X.X....xX......sx.X.... [ 82%]
.X.XX......X.......x.X...s.X.x...XX.....x..X......xX.............X...... [ 84%]
.................s..........................................X........... [ 85%]
....................................................s......x.......X.... [ 86%]
..................X.........................X.......x..X..X............. [ 88%]
.............X...................X....X..x....x..X..X..x.....x......x... [ 89%]
Xx...x..X.x...x........................X..xX...................x...X.... [ 90%]
.......X......x.....................X..........................X.......x. [ 92%]
...............x.....................................................x.. [ 93%]
....................x..x.xx.......x...........x.............xx.......... [ 94%]
.X..x.....x............x...x...x...xx.........x......................... [ 96%]
......x...x............................................................. [ 97%]
........................................................................ [ 98%]
............ss...........................................                [100%]

----------- coverage: platform linux, python 3.7.7-final-0 -----------
---------------------- coverage: failed workers ----------------------
The following workers failed to return coverage data, ensure that pytest-cov is installed on these workers.
gw16
gw28
Coverage XML written to file coverage.xml

= 5002 passed, 69 skipped, 176 xfailed, 152 xpassed, 9414 warnings in 91.48s (0:01:31) =

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modin-bot commented Sep 8, 2020 •
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TeamCity Dask test results bot

Tests PASSed

Tests Logs 
============================= test session starts ==============================
platform linux -- Python 3.7.7, pytest-6.0.1, py-1.9.0, pluggy-0.13.1
rootdir: /modin, configfile: setup.cfg
plugins: openfiles-0.5.0, remotedata-0.3.2, cov-2.10.1, forked-1.3.0, xdist-2.1.0
collected 113 items

modin/pandas/test/test_io.py .................sx..........s............. [ 38%]
....................................s..s.X.....s..................ss..   [100%]

----------- coverage: platform linux, python 3.7.7-final-0 -----------
Coverage XML written to file coverage.xml


= 104 passed, 7 skipped, 1 xfailed, 1 xpassed, 117 warnings in 79.74s (0:01:19) =
Closing remaining open files:test_write_pandas.hdf...donetest_write_modin.hdf...done
============================= test session starts ==============================
platform linux -- Python 3.7.7, pytest-6.0.1, py-1.9.0, pluggy-0.13.1
rootdir: /modin, configfile: setup.cfg
plugins: openfiles-0.5.0, remotedata-0.3.2, cov-2.10.1, forked-1.3.0, xdist-2.1.0
gw0 I / gw1 I / gw2 I / gw3 I / gw4 I / gw5 I / gw6 I / gw7 I / gw8 I / gw9 I / gw10 I / gw11 I / gw12 I / gw13 I / gw14 I / gw15 I / gw16 I / gw17 I / gw18 I / gw19 I / gw20 I / gw21 I / gw22 I / gw23 I / gw24 I / gw25 I / gw26 I / gw27 I / gw28 I / gw29 I / gw30 I / gw31 I / gw32 I / gw33 I / gw34 I / gw35 I / gw36 I / gw37 I / gw38 I / gw39 I / gw40 I / gw41 I / gw42 I / gw43 I / gw44 I / gw45 I / gw46 I / gw47 I
gw0 [5399] / gw1 [5399] / gw2 [5399] / gw3 [5399] / gw4 [5399] / gw5 [5399] / gw6 [5399] / gw7 [5399] / gw8 [5399] / gw9 [5399] / gw10 [5399] / gw11 [5399] / gw12 [5399] / gw13 [5399] / gw14 [5399] / gw15 [5399] / gw16 [5399] / gw17 [5399] / gw18 [5399] / gw19 [5399] / gw20 [5399] / gw21 [5399] / gw22 [5399] / gw23 [5399] / gw24 [5399] / gw25 [5399] / gw26 [5399] / gw27 [5399] / gw28 [5399] / gw29 [5399] / gw30 [5399] / gw31 [5399] / gw32 [5399] / gw33 [5399] / gw34 [5399] / gw35 [5399] / gw36 [5399] / gw37 [5399] / gw38 [5399] / gw39 [5399] / gw40 [5399] / gw41 [5399] / gw42 [5399] / gw43 [5399] / gw44 [5399] / gw45 [5399] / gw46 [5399] / gw47 [5399]

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.x.....x..x......x..x......................x.............x.x.....x...... [ 14%]
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.........x......xx........x.............................................. [ 17%]
.x...................................................................... [ 18%]
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....x....xx.....X..........X...ss....s.ssssss.ss.......x................ [ 44%]
.X......x...x.....x.......x....x.X..x.X..........X......X......X.......X. [ 45%]
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.....................................X...........................s...... [ 76%]
..s............................s...........s..........s.x.......s.x..... [ 77%]
.............sxx....X......s.....x..........ss..........x......s........ [ 78%]
.......s...x.....x...s........x....s........s.xx....x.x....s........x... [ 80%]
s.......s..x..x........s....x..X.X.X.X...X.XX..X.............Xx......sX. [ 81%]
...x................X....XX.sX...X....X.X......X........XX..sXXXX.X..... [ 82%]
.X..X.......XXX.sx.X...X...X.......X.X...XX.Xx.s.X...X.X..XX......X...X. [ 84%]
.....X.X.X......XX..........X.................................X......... [ 85%]
........................................................................ [ 86%]
.x.x.X.....X............................................................ [ 88%]
..........X.............X.............X.................................. [ 89%]
.x..x.X........x......X....Xx......x...x............x.........xx........ [ 90%]
..x.x...................x.x.........................x................x.. [ 92%]
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...x...........x..x.xx..........x....x.............x........x....x.x.... [ 96%]
........................................................................ [ 97%]
.................................................X..X....x...x...X...... [ 98%]
..............................................................           [100%]

----------- coverage: platform linux, python 3.7.7-final-0 -----------
Coverage XML written to file coverage.xml

= 5002 passed, 69 skipped, 176 xfailed, 152 xpassed, 9547 warnings in 122.01s (0:02:02) =
============================= test session starts ==============================
platform linux -- Python 3.7.7, pytest-6.0.1, py-1.9.0, pluggy-0.13.1
rootdir: /modin, configfile: setup.cfg
plugins: openfiles-0.5.0, remotedata-0.3.2, cov-2.10.1, forked-1.3.0, xdist-2.1.0
collected 113 items

modin/pandas/test/test_io.py .................sx..........s............. [ 38%]
....................................s..s.X.....s..................ss..   [100%]

----------- coverage: platform linux, python 3.7.7-final-0 -----------
Coverage XML written to file coverage.xml


= 104 passed, 7 skipped, 1 xfailed, 1 xpassed, 117 warnings in 79.74s (0:01:19) =
Closing remaining open files:test_write_pandas.hdf...donetest_write_modin.hdf...done
============================= test session starts ==============================
platform linux -- Python 3.7.7, pytest-6.0.1, py-1.9.0, pluggy-0.13.1
rootdir: /modin, configfile: setup.cfg
plugins: openfiles-0.5.0, remotedata-0.3.2, cov-2.10.1, forked-1.3.0, xdist-2.1.0
gw0 I / gw1 I / gw2 I / gw3 I / gw4 I / gw5 I / gw6 I / gw7 I / gw8 I / gw9 I / gw10 I / gw11 I / gw12 I / gw13 I / gw14 I / gw15 I / gw16 I / gw17 I / gw18 I / gw19 I / gw20 I / gw21 I / gw22 I / gw23 I / gw24 I / gw25 I / gw26 I / gw27 I / gw28 I / gw29 I / gw30 I / gw31 I / gw32 I / gw33 I / gw34 I / gw35 I / gw36 I / gw37 I / gw38 I / gw39 I / gw40 I / gw41 I / gw42 I / gw43 I / gw44 I / gw45 I / gw46 I / gw47 I
gw0 [5399] / gw1 [5399] / gw2 [5399] / gw3 [5399] / gw4 [5399] / gw5 [5399] / gw6 [5399] / gw7 [5399] / gw8 [5399] / gw9 [5399] / gw10 [5399] / gw11 [5399] / gw12 [5399] / gw13 [5399] / gw14 [5399] / gw15 [5399] / gw16 [5399] / gw17 [5399] / gw18 [5399] / gw19 [5399] / gw20 [5399] / gw21 [5399] / gw22 [5399] / gw23 [5399] / gw24 [5399] / gw25 [5399] / gw26 [5399] / gw27 [5399] / gw28 [5399] / gw29 [5399] / gw30 [5399] / gw31 [5399] / gw32 [5399] / gw33 [5399] / gw34 [5399] / gw35 [5399] / gw36 [5399] / gw37 [5399] / gw38 [5399] / gw39 [5399] / gw40 [5399] / gw41 [5399] / gw42 [5399] / gw43 [5399] / gw44 [5399] / gw45 [5399] / gw46 [5399] / gw47 [5399]

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x.x................................................x.x.................. [ 41%]
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.X......x...x.....x.......x....x.X..x.X..........X......X......X.......X. [ 45%]
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s.......s..x..x........s....x..X.X.X.X...X.XX..X.............Xx......sX. [ 81%]
...x................X....XX.sX...X....X.X......X........XX..sXXXX.X..... [ 82%]
.X..X.......XXX.sx.X...X...X.......X.X...XX.Xx.s.X...X.X..XX......X...X. [ 84%]
.....X.X.X......XX..........X.................................X......... [ 85%]
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----------- coverage: platform linux, python 3.7.7-final-0 -----------
Coverage XML written to file coverage.xml

= 5002 passed, 69 skipped, 176 xfailed, 152 xpassed, 9547 warnings in 122.01s (0:02:02) =

anmyachev
anmyachev requested changes Sep 8, 2020
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codecov bot commented Sep 8, 2020 •
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Codecov Report

Merging #2048 into master will increase coverage by 0.01%.
The diff coverage is 94.11%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master    #2048      +/-   ##
==========================================
+ Coverage   81.94%   81.96%   +0.01%     
==========================================
  Files          79       79              
  Lines        9564     9579      +15     
==========================================
+ Hits         7837     7851      +14     
- Misses       1727     1728       +1
Impacted Files Coverage Δ
modin/pandas/base.py 94.42% <ø> (-0.01%) ⬇️
modin/pandas/series.py 95.19% <85.71%> (-0.07%) ⬇️
modin/backends/base/query_compiler.py 100.00% <100.00%> (ø)
modin/backends/pandas/query_compiler.py 96.57% <100.00%> (+<0.01%) ⬆️
modin/pandas/dataframe.py 90.42% <100.00%> (+0.07%) ⬆️

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anmyachev
anmyachev requested changes Sep 8, 2020
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modin/pandas/dataframe.py
@@ -2180,6 +2180,59 @@ def is_dtype_instance_mapper(column, dtype):
]
return self.drop(columns=self.columns[indicate], inplace=False)

def sem(
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Implementation of the method seems to me identical for Series and Dataframe.

Can implementation be defined in backends/pandas/query_compiler?

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The implementation is specific for Series and DataFrame. Because we treat Series as DataFrame in the backend, the implementation can't be defined in backends/pandas/query_compiler.

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docs/supported_apis/dataframe_supported.rst Show resolved Hide resolved
@YarShev YarShev force-pushed the dev/yigoshev-sem branch 3 times, most recently from ec9a67e to 518c611 Compare September 9, 2020 06:52
@YarShev YarShev force-pushed the dev/yigoshev-sem branch 3 times, most recently from 4eb08e2 to c9d090e Compare September 9, 2020 07:38
@YarShev
FEAT-modin-project#1285: Add sem implementation for Series and `D…
beb13ee 
…ataFrame`

Signed-off-by: Igoshev, Yaroslav <yaroslav.igoshev@intel.com>
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anmyachev approved these changes Sep 9, 2020
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thanks @YarShev !

@anmyachev anmyachev merged commit dd27013 into modin-project:master Sep 9, 2020
aregm pushed a commit to aregm/modin that referenced this pull request Sep 16, 2020
@YarShev @aregm
FEAT-modin-project#1285: Add sem implementation for Series and `D…
1e6bbde 
…ataFrame` (modin-project#2048)

Signed-off-by: Igoshev, Yaroslav <yaroslav.igoshev@intel.com>
@YarShev YarShev deleted the dev/yigoshev-sem branch September 18, 2020 12:21
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@anmyachev anmyachev anmyachev approved these changes

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sem function implementation
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