Merge pull request #191 from RoanKanninga/master

updated to latest version

README.md

@@ -26,3 +26,4 @@ A joint analysis has been performed of all the samples in the project. This lead
 <a name="r4"> 4. McKenna et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. </a>
 
 <a name="r5"> 5. Van der Auwera et al. From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline.</a>
+

docs/ngs-quickstart.md

@@ -5,7 +5,7 @@ This is the Quick tutorial, when there are problems first go to the detailed [in
 We first have to load EasyBuild, this can be done with this command
 ```bash
 module load EasyBuild
-eb NGS_DNA-3.4.3.eb --robot -–robot-paths=${pathToMYeasybuild}/easybuild-easyconfigs/easybuild/easyconfigs/:
+eb NGS_DNA-3.4.4.eb --robot -–robot-paths=${pathToMYeasybuild}/easybuild-easyconfigs/easybuild/easyconfigs/:
 ```
 **_Note:_** some software cannot be downloaded automagically due to for example licensing or technical issues and the build will fail initially.
 In these cases you will have to download manually and copy the sources to

startFromVcf.sh

@@ -1,9 +1,8 @@
 #!/bin/bash
 
-
 set -e
 set -u
-module load NGS_DNA/3.4.3
+module load NGS_DNA/3.4.4
 module list
 host=$(hostname -s)
 environmentParameters="parameters_${host}"

templates/generate_template.sh

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-module load NGS_DNA/3.4.3
+module load NGS_DNA/3.4.4
 module list
 host=$(hostname -s)
 environmentParameters="parameters_${host}"

test/test_pipeline.sh

@@ -131,7 +131,7 @@ fi
 echo "pr number: $1"
 
 PULLREQUEST=$1
-NGS_DNA_VERSION=NGS_DNA/3.4.3
+NGS_DNA_VERSION=NGS_DNA/3.4.4
 
 git clone https://github.com/molgenis/NGS_DNA.git
 cd ${workfolder}/tmp/NGS_DNA