diff --git a/compute5/PROseq/workflow.csv b/compute5/PROseq/workflow.csv index 957a2502..c095110c 100644 --- a/compute5/PROseq/workflow.csv +++ b/compute5/PROseq/workflow.csv @@ -1,8 +1,7 @@ step,protocol,dependencies Fastqc,protocols/Fastqc.sh, -StarRunAlignmentP1,protocols/StarRunAlignmentP1.sh, -StarRunAlignmentP2,protocols/StarRunAlignmentP2.sh,StarRunAlignmentP1 -AddOrReplaceReadGroups,protocols/AddOrReplaceReadGroups.sh,StarRunAlignmentP2 +BAW,protocols/BAW.sh, +AddOrReplaceReadGroups,protocols/AddOrReplaceReadGroups.sh,BAW MergeBamFiles,protocols/MergeBamFiles.sh,AddOrReplaceReadGroups MarkDuplicates,protocols/MarkDuplicates.sh,MergeBamFiles CollectRnaSeqMetrics,protocols/CollectRnaSeqMetrics.sh,MarkDuplicates