From 7230b404051441850bb8ad58f65bf86876c0cd2d Mon Sep 17 00:00:00 2001 From: Niek de Klein Date: Tue, 16 Jun 2015 10:53:21 +0200 Subject: [PATCH] Update workflow.csv --- compute5/PROseq/workflow.csv | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/compute5/PROseq/workflow.csv b/compute5/PROseq/workflow.csv index 957a2502..c095110c 100644 --- a/compute5/PROseq/workflow.csv +++ b/compute5/PROseq/workflow.csv @@ -1,8 +1,7 @@ step,protocol,dependencies Fastqc,protocols/Fastqc.sh, -StarRunAlignmentP1,protocols/StarRunAlignmentP1.sh, -StarRunAlignmentP2,protocols/StarRunAlignmentP2.sh,StarRunAlignmentP1 -AddOrReplaceReadGroups,protocols/AddOrReplaceReadGroups.sh,StarRunAlignmentP2 +BAW,protocols/BAW.sh, +AddOrReplaceReadGroups,protocols/AddOrReplaceReadGroups.sh,BAW MergeBamFiles,protocols/MergeBamFiles.sh,AddOrReplaceReadGroups MarkDuplicates,protocols/MarkDuplicates.sh,MergeBamFiles CollectRnaSeqMetrics,protocols/CollectRnaSeqMetrics.sh,MarkDuplicates