diff --git a/poetry.lock b/poetry.lock index 41b14ab..4138245 100644 --- a/poetry.lock +++ b/poetry.lock @@ -51,10 +51,10 @@ optional = false python-versions = ">=3.5" [package.extras] -dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"] -docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] -tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "zope.interface", "cloudpickle"] -tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "cloudpickle"] +dev = ["cloudpickle", "coverage[toml] (>=5.0.2)", "furo", "hypothesis", "mypy (>=0.900,!=0.940)", "pre-commit", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "sphinx", "sphinx-notfound-page", "zope.interface"] +docs = ["furo", "sphinx", "sphinx-notfound-page", "zope.interface"] +tests = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "zope.interface"] +tests-no-zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins"] [[package]] name = "babel" @@ -150,8 +150,8 @@ python-versions = ">=3.7" cffi = ">=1.1.0" [package.extras] -doc = ["sphinx", "sphinx-rtd-theme"] -test = ["pytest", "flake8", "isort", "numpy", "pikepdf"] +doc = ["sphinx", "sphinx_rtd_theme"] +test = ["flake8", "isort", "numpy", "pikepdf", "pytest"] xcb = ["xcffib (>=0.3.2)"] [[package]] @@ -171,7 +171,7 @@ tinycss2 = "*" [package.extras] doc = ["sphinx", "sphinx-rtd-theme"] -test = ["pytest-runner", "pytest-cov", "pytest-flake8", "pytest-isort"] +test = ["pytest-cov", "pytest-flake8", "pytest-isort", "pytest-runner"] [[package]] name = "catalogue" @@ -183,7 +183,7 @@ python-versions = ">=3.6" [[package]] name = "certifi" -version = "2022.9.24" +version = "2022.12.7" description = "Python package for providing Mozilla's CA Bundle." category = "main" optional = false @@ -228,7 +228,7 @@ optional = false python-versions = ">=3.6.0" [package.extras] -unicode_backport = ["unicodedata2"] +unicode-backport = ["unicodedata2"] [[package]] name = "click" @@ -258,7 +258,7 @@ optional = false python-versions = "*" [package.extras] -test = ["hypothesis (==3.55.3)", "flake8 (==3.7.8)"] +test = ["flake8 (==3.7.8)", "hypothesis (==3.55.3)"] [[package]] name = "conllu" @@ -295,8 +295,8 @@ tinycss2 = "*" webencodings = "*" [package.extras] +doc = ["sphinx", "sphinx_rtd_theme"] test = ["flake8", "isort", "pytest"] -doc = ["sphinx-rtd-theme", "sphinx"] [[package]] name = "cymem" @@ -334,7 +334,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" wrapt = ">=1.10,<2" [package.extras] -dev = ["tox", "bump2version (<1)", "sphinx (<2)", "importlib-metadata (<3)", "importlib-resources (<4)", "configparser (<5)", "sphinxcontrib-websupport (<2)", "zipp (<2)", "PyTest (<5)", "PyTest-Cov (<2.6)", "pytest", "pytest-cov"] +dev = ["PyTest", "PyTest (<5)", "PyTest-Cov", "PyTest-Cov (<2.6)", "bump2version (<1)", "configparser (<5)", "importlib-metadata (<3)", "importlib-resources (<4)", "sphinx (<2)", "sphinxcontrib-websupport (<2)", "tox", "zipp (<2)"] [[package]] name = "deprecation" @@ -389,7 +389,7 @@ websocket-client = ">=0.32.0" [package.extras] ssh = ["paramiko (>=2.4.2)"] -tls = ["pyOpenSSL (>=17.5.0)", "cryptography (>=3.4.7)", "idna (>=2.0.0)"] +tls = ["cryptography (>=3.4.7)", "idna (>=2.0.0)", "pyOpenSSL (>=17.5.0)"] [[package]] name = "docutils" @@ -399,6 +399,36 @@ category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +[[package]] +name = "en-core-web-sm" +version = "3.2.0" +description = "English pipeline optimized for CPU. Components: tok2vec, tagger, parser, senter, ner, attribute_ruler, lemmatizer." +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +spacy = ">=3.2.0,<3.3.0" + +[package.source] +type = "url" +url = "https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-3.2.0/en_core_web_sm-3.2.0.tar.gz" + +[[package]] +name = "en-ner-craft-md" +version = "0.5.0" +description = "Spacy Models for Biomedical Text." +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +spacy = ">=3.2.3,<3.3.0" + +[package.source] +type = "url" +url = "https://s3-us-west-2.amazonaws.com/ai2-s2-scispacy/releases/v0.5.0/en_ner_craft_md-0.5.0.tar.gz" + [[package]] name = "et-xmlfile" version = "1.1.0" @@ -441,9 +471,9 @@ optional = false python-versions = ">=3.7" [package.extras] -dev = ["tox (>=3)", "flake8", "pep8-naming", "wheel", "twine"] +dev = ["flake8", "pep8-naming", "tox (>=3)", "twine", "wheel"] docs = ["sphinx (>=5)", "sphinx-autodoc-typehints", "sphinx-rtd-theme"] -test = ["pytest (>=7)", "pytest-mock (>=3)", "mock (>=4)", "pytest-cov", "coverage"] +test = ["coverage", "mock (>=4)", "pytest (>=7)", "pytest-cov", "pytest-mock (>=3)"] [[package]] name = "greenlet" @@ -454,7 +484,7 @@ optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*" [package.extras] -docs = ["sphinx"] +docs = ["Sphinx"] [[package]] name = "hbreader" @@ -500,9 +530,9 @@ python-versions = ">=3.7" zipp = ">=0.5" [package.extras] -docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"] +docs = ["jaraco.packaging (>=9)", "rst.linker (>=1.9)", "sphinx"] perf = ["ipython"] -testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.3)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"] +testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"] [[package]] name = "importlib-resources" @@ -516,8 +546,8 @@ python-versions = ">=3.7" zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""} [package.extras] -docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "jaraco.tidelift (>=1.4)"] -testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"] +docs = ["jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx"] +testing = ["pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"] [[package]] name = "iniconfig" @@ -683,8 +713,8 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" six = "*" [package.extras] -test = ["tox"] recomended = ["simplejson"] +test = ["tox"] [[package]] name = "kgx" @@ -713,6 +743,7 @@ neo4j = "4.3" networkx = "*" ordered-set = ">=4.0.2" pandas = ">=1.0.3" +pip = ">=9.0.1" prefixcommons = ">=0.1.4" prologterms = ">=0.0.5" pytest = ">=0.0" @@ -790,7 +821,7 @@ sqlalchemy = ">=1.4.31" watchdog = ">=0.9.0" [package.extras] -docs = ["sphinx-rtd-theme", "sphinx"] +docs = ["sphinx", "sphinx-rtd-theme"] [[package]] name = "linkml-dataops" @@ -838,7 +869,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, != 3.4.*" [package.extras] cssselect = ["cssselect (>=0.7)"] html5 = ["html5lib"] -htmlsoup = ["beautifulsoup4"] +htmlsoup = ["BeautifulSoup4"] source = ["Cython (>=0.29.7)"] [[package]] @@ -853,14 +884,14 @@ python-versions = ">=3.7" mdurl = ">=0.1,<1.0" [package.extras] -testing = ["pytest-regressions", "pytest-cov", "pytest", "coverage"] -rtd = ["sphinx-book-theme", "sphinx-design", "sphinx-copybutton", "sphinx", "pyyaml", "myst-parser", "attrs"] -profiling = ["gprof2dot"] -plugins = ["mdit-py-plugins"] +benchmarking = ["psutil", "pytest", "pytest-benchmark (>=3.2,<4.0)"] +code-style = ["pre-commit (==2.6)"] +compare = ["commonmark (>=0.9.1,<0.10.0)", "markdown (>=3.3.6,<3.4.0)", "mistletoe (>=0.8.1,<0.9.0)", "mistune (>=2.0.2,<2.1.0)", "panflute (>=2.1.3,<2.2.0)"] linkify = ["linkify-it-py (>=1.0,<2.0)"] -compare = ["panflute (>=2.1.3,<2.2.0)", "mistune (>=2.0.2,<2.1.0)", "mistletoe (>=0.8.1,<0.9.0)", "markdown (>=3.3.6,<3.4.0)", "commonmark (>=0.9.1,<0.10.0)"] -code_style = ["pre-commit (==2.6)"] -benchmarking = ["pytest-benchmark (>=3.2,<4.0)", "pytest", "psutil"] +plugins = ["mdit-py-plugins"] +profiling = ["gprof2dot"] +rtd = ["attrs", "myst-parser", "pyyaml", "sphinx", "sphinx-copybutton", "sphinx-design", "sphinx_book_theme"] +testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"] [[package]] name = "markupsafe" @@ -890,9 +921,9 @@ python-versions = ">=3.7" markdown-it-py = ">=1.0.0,<3.0.0" [package.extras] -testing = ["pytest-regressions", "pytest-cov", "pytest", "coverage"] -rtd = ["sphinx-book-theme (>=0.1.0,<0.2.0)", "myst-parser (>=0.16.1,<0.17.0)", "attrs"] -code_style = ["pre-commit"] +code-style = ["pre-commit"] +rtd = ["attrs", "myst-parser (>=0.16.1,<0.17.0)", "sphinx-book-theme (>=0.1.0,<0.2.0)"] +testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"] [[package]] name = "mdurl" @@ -954,10 +985,10 @@ sphinx = ">=4,<6" typing-extensions = "*" [package.extras] -code_style = ["pre-commit (>=2.12,<3.0)"] +code-style = ["pre-commit (>=2.12,<3.0)"] linkify = ["linkify-it-py (>=1.0,<2.0)"] -rtd = ["ipython", "sphinx-book-theme", "sphinx-design", "sphinxext-rediraffe (>=0.2.7,<0.3.0)", "sphinxcontrib.mermaid (>=0.7.1,<0.8.0)", "sphinxext-opengraph (>=0.6.3,<0.7.0)"] -testing = ["beautifulsoup4", "coverage", "pytest (>=6,<7)", "pytest-cov", "pytest-regressions", "pytest-param-files (>=0.3.4,<0.4.0)", "sphinx-pytest", "sphinx (<5.2)"] +rtd = ["ipython", "sphinx-book-theme", "sphinx-design", "sphinxcontrib.mermaid (>=0.7.1,<0.8.0)", "sphinxext-opengraph (>=0.6.3,<0.7.0)", "sphinxext-rediraffe (>=0.2.7,<0.3.0)"] +testing = ["beautifulsoup4", "coverage[toml]", "pytest (>=6,<7)", "pytest-cov", "pytest-param-files (>=0.3.4,<0.4.0)", "pytest-regressions", "sphinx (<5.2)", "sphinx-pytest"] [[package]] name = "neo4j" @@ -979,11 +1010,11 @@ optional = false python-versions = ">=3.8" [package.extras] -default = ["numpy (>=1.19)", "scipy (>=1.8)", "matplotlib (>=3.4)", "pandas (>=1.3)"] -developer = ["pre-commit (>=2.20)", "mypy (>=0.961)"] -doc = ["sphinx (>=5)", "pydata-sphinx-theme (>=0.9)", "sphinx-gallery (>=0.10)", "numpydoc (>=1.4)", "pillow (>=9.1)", "nb2plots (>=0.6)", "texext (>=0.6.6)"] -extra = ["lxml (>=4.6)", "pygraphviz (>=1.9)", "pydot (>=1.4.2)", "sympy (>=1.10)"] -test = ["pytest (>=7.1)", "pytest-cov (>=3.0)", "codecov (>=2.1)"] +default = ["matplotlib (>=3.4)", "numpy (>=1.19)", "pandas (>=1.3)", "scipy (>=1.8)"] +developer = ["mypy (>=0.961)", "pre-commit (>=2.20)"] +doc = ["nb2plots (>=0.6)", "numpydoc (>=1.4)", "pillow (>=9.1)", "pydata-sphinx-theme (>=0.9)", "sphinx (>=5)", "sphinx-gallery (>=0.10)", "texext (>=0.6.6)"] +extra = ["lxml (>=4.6)", "pydot (>=1.4.2)", "pygraphviz (>=1.9)", "sympy (>=1.10)"] +test = ["codecov (>=2.1)", "pytest (>=7.1)", "pytest-cov (>=3.0)"] [[package]] name = "nltk" @@ -1000,9 +1031,9 @@ regex = ">=2021.8.3" tqdm = "*" [package.extras] -all = ["numpy", "pyparsing", "scipy", "matplotlib", "twython", "requests", "scikit-learn", "python-crfsuite"] +all = ["matplotlib", "numpy", "pyparsing", "python-crfsuite", "requests", "scikit-learn", "scipy", "twython"] corenlp = ["requests"] -machine_learning = ["numpy", "python-crfsuite", "scikit-learn", "scipy"] +machine-learning = ["numpy", "python-crfsuite", "scikit-learn", "scipy"] plot = ["matplotlib"] tgrep = ["pyparsing"] twitter = ["twython"] @@ -1061,7 +1092,7 @@ optional = false python-versions = ">=3.7" [package.extras] -dev = ["pytest", "black", "mypy"] +dev = ["black", "mypy", "pytest"] [[package]] name = "packaging" @@ -1084,14 +1115,14 @@ python-versions = ">=3.8" [package.dependencies] numpy = [ - {version = ">=1.21.0", markers = "python_version >= \"3.10\""}, {version = ">=1.20.3", markers = "python_version < \"3.10\""}, + {version = ">=1.21.0", markers = "python_version >= \"3.10\""}, ] python-dateutil = ">=2.8.1" pytz = ">=2020.1" [package.extras] -test = ["pytest-xdist (>=1.31)", "pytest (>=6.0)", "hypothesis (>=5.5.3)"] +test = ["hypothesis (>=5.5.3)", "pytest (>=6.0)", "pytest-xdist (>=1.31)"] [[package]] name = "parse" @@ -1122,10 +1153,10 @@ smart-open = ">=5.2.1,<6.0.0" typer = ">=0.3.0,<1.0.0" [package.extras] -test = ["typer-cli", "mock", "pytest-coverage", "pytest"] -s3 = ["boto3"] +all = ["boto3", "google-cloud-storage (>=1.26.0,<2.0.0)", "mock", "pytest", "pytest-coverage", "typer-cli"] gcs = ["google-cloud-storage (>=1.26.0,<2.0.0)"] -all = ["typer-cli", "mock", "pytest-coverage", "pytest", "boto3", "google-cloud-storage (>=1.26.0,<2.0.0)"] +s3 = ["boto3"] +test = ["mock", "pytest", "pytest-coverage", "typer-cli"] [[package]] name = "pillow" @@ -1139,6 +1170,14 @@ python-versions = ">=3.7" docs = ["furo", "olefile", "sphinx (>=2.4)", "sphinx-copybutton", "sphinx-issues (>=3.0.1)", "sphinx-removed-in", "sphinxext-opengraph"] tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "packaging", "pyroma", "pytest", "pytest-cov", "pytest-timeout"] +[[package]] +name = "pip" +version = "22.3.1" +description = "The PyPA recommended tool for installing Python packages." +category = "main" +optional = false +python-versions = ">=3.7" + [[package]] name = "pkgutil-resolve-name" version = "1.3.10" @@ -1156,8 +1195,8 @@ optional = false python-versions = ">=3.7" [package.extras] -docs = ["furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)", "sphinx (>=4)"] -test = ["appdirs (==1.4.4)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)", "pytest (>=6)"] +docs = ["furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx (>=4)", "sphinx-autodoc-typehints (>=1.12)"] +test = ["appdirs (==1.4.4)", "pytest (>=6)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)"] [[package]] name = "pluggy" @@ -1168,8 +1207,8 @@ optional = false python-versions = ">=3.6" [package.extras] -testing = ["pytest-benchmark", "pytest"] -dev = ["tox", "pre-commit"] +dev = ["pre-commit", "tox"] +testing = ["pytest", "pytest-benchmark"] [[package]] name = "ply" @@ -1233,7 +1272,7 @@ optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [package.extras] -test = ["ipaddress", "mock", "enum34", "pywin32", "wmi"] +test = ["enum34", "ipaddress", "mock", "pywin32", "wmi"] [[package]] name = "py" @@ -1325,7 +1364,7 @@ optional = false python-versions = ">=3.6.8" [package.extras] -diagrams = ["railroad-diagrams", "jinja2"] +diagrams = ["jinja2", "railroad-diagrams"] [[package]] name = "pyrsistent" @@ -1411,7 +1450,7 @@ coverage = {version = ">=5.2.1", extras = ["toml"]} pytest = ">=4.6" [package.extras] -testing = ["fields", "hunter", "process-tests", "six", "pytest-xdist", "virtualenv"] +testing = ["fields", "hunter", "process-tests", "pytest-xdist", "six", "virtualenv"] [[package]] name = "pytest-logging" @@ -1503,11 +1542,12 @@ python-versions = ">=3.7" [package.dependencies] isodate = "*" pyparsing = "*" +setuptools = "*" [package.extras] berkeleydb = ["berkeleydb"] -dev = ["black (==22.6.0)", "flake8", "isort", "mypy", "pep8-naming", "types-setuptools", "flakeheaven"] -docs = ["myst-parser", "sphinx (<6)", "sphinxcontrib-apidoc", "sphinxcontrib-kroki", "sphinx-autodoc-typehints"] +dev = ["black (==22.6.0)", "flake8", "flakeheaven", "isort", "mypy", "pep8-naming", "types-setuptools"] +docs = ["myst-parser", "sphinx (<6)", "sphinx-autodoc-typehints", "sphinxcontrib-apidoc", "sphinxcontrib-kroki"] html = ["html5lib"] networkx = ["networkx"] tests = ["html5lib", "pytest", "pytest-cov"] @@ -1572,7 +1612,7 @@ urllib3 = ">=1.21.1,<1.27" [package.extras] socks = ["PySocks (>=1.5.6,!=1.5.7)"] -use_chardet_on_py3 = ["chardet (>=3.0.2,<6)"] +use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"] [[package]] name = "ruamel.yaml" @@ -1612,10 +1652,10 @@ scipy = ">=1.3.2" threadpoolctl = ">=2.0.0" [package.extras] -tests = ["numpydoc (>=1.2.0)", "pyamg (>=4.0.0)", "mypy (>=0.961)", "black (>=22.3.0)", "flake8 (>=3.8.2)", "pytest-cov (>=2.9.0)", "pytest (>=5.0.1)", "pandas (>=1.0.5)", "scikit-image (>=0.16.2)", "matplotlib (>=3.1.2)"] -examples = ["seaborn (>=0.9.0)", "pandas (>=1.0.5)", "scikit-image (>=0.16.2)", "matplotlib (>=3.1.2)"] -docs = ["sphinxext-opengraph (>=0.4.2)", "sphinx-prompt (>=1.3.0)", "Pillow (>=7.1.2)", "numpydoc (>=1.2.0)", "sphinx-gallery (>=0.7.0)", "sphinx (>=4.0.1)", "memory-profiler (>=0.57.0)", "seaborn (>=0.9.0)", "pandas (>=1.0.5)", "scikit-image (>=0.16.2)", "matplotlib (>=3.1.2)"] -benchmark = ["memory-profiler (>=0.57.0)", "pandas (>=1.0.5)", "matplotlib (>=3.1.2)"] +benchmark = ["matplotlib (>=3.1.2)", "memory-profiler (>=0.57.0)", "pandas (>=1.0.5)"] +docs = ["Pillow (>=7.1.2)", "matplotlib (>=3.1.2)", "memory-profiler (>=0.57.0)", "numpydoc (>=1.2.0)", "pandas (>=1.0.5)", "scikit-image (>=0.16.2)", "seaborn (>=0.9.0)", "sphinx (>=4.0.1)", "sphinx-gallery (>=0.7.0)", "sphinx-prompt (>=1.3.0)", "sphinxext-opengraph (>=0.4.2)"] +examples = ["matplotlib (>=3.1.2)", "pandas (>=1.0.5)", "scikit-image (>=0.16.2)", "seaborn (>=0.9.0)"] +tests = ["black (>=22.3.0)", "flake8 (>=3.8.2)", "matplotlib (>=3.1.2)", "mypy (>=0.961)", "numpydoc (>=1.2.0)", "pandas (>=1.0.5)", "pyamg (>=4.0.0)", "pytest (>=5.0.1)", "pytest-cov (>=2.9.0)", "scikit-image (>=0.16.2)"] [[package]] name = "scipy" @@ -1646,6 +1686,19 @@ requests = ">=2.0.0,<3.0.0" scikit-learn = ">=0.20.3" spacy = ">=3.2.0,<3.3.0" +[[package]] +name = "setuptools" +version = "65.6.3" +description = "Easily download, build, install, upgrade, and uninstall Python packages" +category = "main" +optional = false +python-versions = ">=3.7" + +[package.extras] +docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-notfound-page (==0.8.3)", "sphinx-reredirects", "sphinxcontrib-towncrier"] +testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8 (<5)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pip (>=19.1)", "pip-run (>=8.8)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-timeout", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"] +testing-integration = ["build[virtualenv]", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"] + [[package]] name = "shexjsg" version = "0.8.2" @@ -1674,12 +1727,12 @@ optional = false python-versions = ">=3.6,<4.0" [package.extras] -all = ["boto3", "google-cloud-storage", "azure-storage-blob", "azure-common", "azure-core", "requests"] -azure = ["azure-storage-blob", "azure-common", "azure-core"] +all = ["azure-common", "azure-core", "azure-storage-blob", "boto3", "google-cloud-storage", "requests"] +azure = ["azure-common", "azure-core", "azure-storage-blob"] gcs = ["google-cloud-storage"] http = ["requests"] s3 = ["boto3"] -test = ["boto3", "google-cloud-storage", "azure-storage-blob", "azure-common", "azure-core", "requests", "moto[server] (==1.3.14)", "pathlib2", "responses", "paramiko", "parameterizedtestcase", "pytest", "pytest-rerunfailures"] +test = ["azure-common", "azure-core", "azure-storage-blob", "boto3", "google-cloud-storage", "moto[server] (==1.3.14)", "parameterizedtestcase", "paramiko", "pathlib2", "pytest", "pytest-rerunfailures", "requests", "responses"] webhdfs = ["requests"] [[package]] @@ -1711,6 +1764,7 @@ pathy = ">=0.3.5" preshed = ">=3.0.2,<3.1.0" pydantic = ">=1.7.4,<1.8 || >1.8,<1.8.1 || >1.8.1,<1.9.0" requests = ">=2.13.0,<3.0.0" +setuptools = "*" spacy-legacy = ">=3.0.8,<3.1.0" spacy-loggers = ">=1.0.0,<2.0.0" srsly = ">=2.4.1,<3.0.0" @@ -1735,7 +1789,7 @@ cuda80 = ["cupy-cuda80 (>=5.0.0b4,<11.0.0)"] cuda90 = ["cupy-cuda90 (>=5.0.0b4,<11.0.0)"] cuda91 = ["cupy-cuda91 (>=5.0.0b4,<11.0.0)"] cuda92 = ["cupy-cuda92 (>=5.0.0b4,<11.0.0)"] -ja = ["sudachipy (>=0.5.2,!=0.6.1)", "sudachidict-core (>=20211220)"] +ja = ["sudachidict-core (>=20211220)", "sudachipy (>=0.5.2,!=0.6.1)"] ko = ["natto-py (==0.9.0)"] lookups = ["spacy-lookups-data (>=1.0.3,<1.1.0)"] ray = ["spacy-ray (>=0.1.0,<1.0.0)"] @@ -1786,10 +1840,10 @@ python-versions = ">=3.7" rdflib = ">=6.1.1" [package.extras] -pandas = ["pandas (>=1.3.5)"] +dev = ["mypy (>=0.931)", "pandas (>=1.3.5)", "pandas-stubs (>=1.2.0.48)", "setuptools (>=3.7.1)"] +docs = ["sphinx (<5)", "sphinx-rtd-theme"] keepalive = ["keepalive (>=0.5)"] -docs = ["sphinx-rtd-theme", "sphinx (<5)"] -dev = ["pandas-stubs (>=1.2.0.48)", "pandas (>=1.3.5)", "mypy (>=0.931)", "setuptools (>=3.7.1)"] +pandas = ["pandas (>=1.3.5)"] [[package]] name = "sphinx" @@ -1820,8 +1874,8 @@ sphinxcontrib-serializinghtml = ">=1.1.5" [package.extras] docs = ["sphinxcontrib-websupport"] -lint = ["flake8 (>=3.5.0)", "flake8-comprehensions", "flake8-bugbear", "flake8-simplify", "isort", "mypy (>=0.981)", "sphinx-lint", "docutils-stubs", "types-typed-ast", "types-requests"] -test = ["pytest (>=4.6)", "html5lib", "typed-ast", "cython"] +lint = ["docutils-stubs", "flake8 (>=3.5.0)", "flake8-bugbear", "flake8-comprehensions", "flake8-simplify", "isort", "mypy (>=0.981)", "sphinx-lint", "types-requests", "types-typed-ast"] +test = ["cython", "html5lib", "pytest (>=4.6)", "typed_ast"] [[package]] name = "sphinx-click" @@ -1860,8 +1914,8 @@ optional = false python-versions = ">=3.5" [package.extras] +lint = ["docutils-stubs", "flake8", "mypy"] test = ["pytest"] -lint = ["docutils-stubs", "mypy", "flake8"] [[package]] name = "sphinxcontrib-devhelp" @@ -1872,8 +1926,8 @@ optional = false python-versions = ">=3.5" [package.extras] +lint = ["docutils-stubs", "flake8", "mypy"] test = ["pytest"] -lint = ["docutils-stubs", "mypy", "flake8"] [[package]] name = "sphinxcontrib-htmlhelp" @@ -1884,8 +1938,8 @@ optional = false python-versions = ">=3.6" [package.extras] +lint = ["docutils-stubs", "flake8", "mypy"] test = ["html5lib", "pytest"] -lint = ["docutils-stubs", "mypy", "flake8"] [[package]] name = "sphinxcontrib-jsmath" @@ -1896,7 +1950,7 @@ optional = false python-versions = ">=3.5" [package.extras] -test = ["mypy", "flake8", "pytest"] +test = ["flake8", "mypy", "pytest"] [[package]] name = "sphinxcontrib-napoleon" @@ -1919,8 +1973,8 @@ optional = false python-versions = ">=3.5" [package.extras] +lint = ["docutils-stubs", "flake8", "mypy"] test = ["pytest"] -lint = ["docutils-stubs", "mypy", "flake8"] [[package]] name = "sphinxcontrib-serializinghtml" @@ -1931,7 +1985,7 @@ optional = false python-versions = ">=3.5" [package.extras] -lint = ["flake8", "mypy", "docutils-stubs"] +lint = ["docutils-stubs", "flake8", "mypy"] test = ["pytest"] [[package]] @@ -1946,25 +2000,25 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7" greenlet = {version = "!=0.4.17", markers = "python_version >= \"3\" and (platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\")"} [package.extras] -aiomysql = ["greenlet (!=0.4.17)", "aiomysql"] -aiosqlite = ["typing_extensions (!=3.10.0.1)", "greenlet (!=0.4.17)", "aiosqlite"] +aiomysql = ["aiomysql", "greenlet (!=0.4.17)"] +aiosqlite = ["aiosqlite", "greenlet (!=0.4.17)", "typing_extensions (!=3.10.0.1)"] asyncio = ["greenlet (!=0.4.17)"] -asyncmy = ["greenlet (!=0.4.17)", "asyncmy (>=0.2.3,!=0.2.4)"] -mariadb_connector = ["mariadb (>=1.0.1,!=1.1.2)"] +asyncmy = ["asyncmy (>=0.2.3,!=0.2.4)", "greenlet (!=0.4.17)"] +mariadb-connector = ["mariadb (>=1.0.1,!=1.1.2)"] mssql = ["pyodbc"] -mssql_pymssql = ["pymssql"] -mssql_pyodbc = ["pyodbc"] -mypy = ["sqlalchemy2-stubs", "mypy (>=0.910)"] -mysql = ["mysqlclient (>=1.4.0,<2)", "mysqlclient (>=1.4.0)"] -mysql_connector = ["mysql-connector-python"] -oracle = ["cx_oracle (>=7,<8)", "cx_oracle (>=7)"] +mssql-pymssql = ["pymssql"] +mssql-pyodbc = ["pyodbc"] +mypy = ["mypy (>=0.910)", "sqlalchemy2-stubs"] +mysql = ["mysqlclient (>=1.4.0)", "mysqlclient (>=1.4.0,<2)"] +mysql-connector = ["mysql-connector-python"] +oracle = ["cx_oracle (>=7)", "cx_oracle (>=7,<8)"] postgresql = ["psycopg2 (>=2.7)"] -postgresql_asyncpg = ["greenlet (!=0.4.17)", "asyncpg"] -postgresql_pg8000 = ["pg8000 (>=1.16.6,!=1.29.0)"] -postgresql_psycopg2binary = ["psycopg2-binary"] -postgresql_psycopg2cffi = ["psycopg2cffi"] -pymysql = ["pymysql (<1)", "pymysql"] -sqlcipher = ["sqlcipher3-binary"] +postgresql-asyncpg = ["asyncpg", "greenlet (!=0.4.17)"] +postgresql-pg8000 = ["pg8000 (>=1.16.6,!=1.29.0)"] +postgresql-psycopg2binary = ["psycopg2-binary"] +postgresql-psycopg2cffi = ["psycopg2cffi"] +pymysql = ["pymysql", "pymysql (<1)"] +sqlcipher = ["sqlcipher3_binary"] [[package]] name = "srsly" @@ -2010,17 +2064,17 @@ pyxDamerauLevenshtein = {version = "*", optional = true, markers = "extra == \"e rapidfuzz = {version = ">=2.6.0", optional = true, markers = "extra == \"extras\""} [package.extras] -dameraulevenshtein = ["jellyfish", "pyxdameraulevenshtein", "rapidfuzz (>=2.6.0)"] -hamming = ["abydos", "distance", "jellyfish", "python-levenshtein", "rapidfuzz (>=2.6.0)"] -jaro = ["python-levenshtein", "rapidfuzz (>=2.6.0)"] +all = ["abydos", "distance", "jellyfish", "numpy", "py-stringmatching", "pylev", "python-Levenshtein", "pyxDamerauLevenshtein", "rapidfuzz (>=2.6.0)", "tabulate"] +benchmark = ["abydos", "distance", "jellyfish", "numpy", "py-stringmatching", "pylev", "python-Levenshtein", "pyxDamerauLevenshtein", "rapidfuzz (>=2.6.0)", "tabulate"] +benchmarks = ["abydos", "distance", "jellyfish", "numpy", "py-stringmatching", "pylev", "python-Levenshtein", "pyxDamerauLevenshtein", "rapidfuzz (>=2.6.0)", "tabulate"] +common = ["abydos", "jellyfish", "numpy", "python-Levenshtein", "pyxDamerauLevenshtein", "rapidfuzz (>=2.6.0)"] +dameraulevenshtein = ["jellyfish", "pyxDamerauLevenshtein", "rapidfuzz (>=2.6.0)"] +extra = ["abydos", "jellyfish", "numpy", "python-Levenshtein", "pyxDamerauLevenshtein", "rapidfuzz (>=2.6.0)"] +extras = ["abydos", "jellyfish", "numpy", "python-Levenshtein", "pyxDamerauLevenshtein", "rapidfuzz (>=2.6.0)"] +hamming = ["abydos", "distance", "jellyfish", "python-Levenshtein", "rapidfuzz (>=2.6.0)"] +jaro = ["python-Levenshtein", "rapidfuzz (>=2.6.0)"] jarowinkler = ["jellyfish", "rapidfuzz (>=2.6.0)"] -levenshtein = ["python-levenshtein", "rapidfuzz (>=2.6.0)"] -all = ["abydos", "distance", "jellyfish", "numpy", "py-stringmatching", "pylev", "python-levenshtein", "pyxdameraulevenshtein", "rapidfuzz (>=2.6.0)", "tabulate"] -benchmark = ["abydos", "distance", "jellyfish", "numpy", "py-stringmatching", "pylev", "python-levenshtein", "pyxdameraulevenshtein", "rapidfuzz (>=2.6.0)", "tabulate"] -benchmarks = ["abydos", "distance", "jellyfish", "numpy", "py-stringmatching", "pylev", "python-levenshtein", "pyxdameraulevenshtein", "rapidfuzz (>=2.6.0)", "tabulate"] -common = ["abydos", "jellyfish", "numpy", "python-levenshtein", "pyxdameraulevenshtein", "rapidfuzz (>=2.6.0)"] -extra = ["abydos", "jellyfish", "numpy", "python-levenshtein", "pyxdameraulevenshtein", "rapidfuzz (>=2.6.0)"] -extras = ["abydos", "jellyfish", "numpy", "python-levenshtein", "pyxdameraulevenshtein", "rapidfuzz (>=2.6.0)"] +levenshtein = ["python-Levenshtein", "rapidfuzz (>=2.6.0)"] lint = ["flake8", "flake8-blind-except", "flake8-bugbear", "flake8-commas", "flake8-logging-format", "flake8-mutable", "flake8-pep3101", "flake8-quotes", "flake8-string-format", "flake8-tidy-imports", "isort", "mypy", "pep8-naming", "twine", "types-tabulate"] test = ["hypothesis", "isort", "numpy", "pytest"] @@ -2040,6 +2094,7 @@ murmurhash = ">=1.0.2,<1.1.0" numpy = ">=1.15.0" preshed = ">=3.0.2,<3.1.0" pydantic = ">=1.7.4,<1.8 || >1.8,<1.8.1 || >1.8.1,<1.9.0" +setuptools = "*" srsly = ">=2.4.0,<3.0.0" wasabi = ">=0.8.1,<1.1.0" @@ -2083,8 +2138,8 @@ python-versions = ">=3.6" webencodings = ">=0.4" [package.extras] -test = ["coverage", "pytest-isort", "pytest-flake8", "pytest-cov", "pytest"] -doc = ["sphinx-rtd-theme", "sphinx"] +doc = ["sphinx", "sphinx_rtd_theme"] +test = ["coverage[toml]", "pytest", "pytest-cov", "pytest-flake8", "pytest-isort"] [[package]] name = "toml" @@ -2122,7 +2177,7 @@ virtualenv = ">=16.0.0,<20.0.0 || >20.0.0,<20.0.1 || >20.0.1,<20.0.2 || >20.0.2, [package.extras] docs = ["pygments-github-lexers (>=0.0.5)", "sphinx (>=2.0.0)", "sphinxcontrib-autoprogram (>=0.1.5)", "towncrier (>=18.5.0)"] -testing = ["flaky (>=3.4.0)", "freezegun (>=0.3.11)", "pytest (>=4.0.0)", "pytest-cov (>=2.5.1)", "pytest-mock (>=1.10.0)", "pytest-randomly (>=1.0.0)", "psutil (>=5.6.1)", "pathlib2 (>=2.3.3)"] +testing = ["flaky (>=3.4.0)", "freezegun (>=0.3.11)", "pathlib2 (>=2.3.3)", "psutil (>=5.6.1)", "pytest (>=4.0.0)", "pytest-cov (>=2.5.1)", "pytest-mock (>=1.10.0)", "pytest-randomly (>=1.0.0)"] [[package]] name = "tox-docker" @@ -2176,10 +2231,10 @@ python-versions = ">=3.6" click = ">=7.1.1,<9.0.0" [package.extras] -test = ["isort (>=5.0.6,<6.0.0)", "black (>=22.3.0,<23.0.0)", "mypy (==0.910)", "pytest-sugar (>=0.9.4,<0.10.0)", "pytest-xdist (>=1.32.0,<2.0.0)", "coverage (>=5.2,<6.0)", "pytest-cov (>=2.10.0,<3.0.0)", "pytest (>=4.4.0,<5.4.0)", "shellingham (>=1.3.0,<2.0.0)"] -doc = ["mdx-include (>=1.4.1,<2.0.0)", "mkdocs-material (>=8.1.4,<9.0.0)", "mkdocs (>=1.1.2,<2.0.0)"] -dev = ["pre-commit (>=2.17.0,<3.0.0)", "flake8 (>=3.8.3,<4.0.0)", "autoflake (>=1.3.1,<2.0.0)"] -all = ["shellingham (>=1.3.0,<2.0.0)", "colorama (>=0.4.3,<0.5.0)"] +all = ["colorama (>=0.4.3,<0.5.0)", "shellingham (>=1.3.0,<2.0.0)"] +dev = ["autoflake (>=1.3.1,<2.0.0)", "flake8 (>=3.8.3,<4.0.0)", "pre-commit (>=2.17.0,<3.0.0)"] +doc = ["mdx-include (>=1.4.1,<2.0.0)", "mkdocs (>=1.1.2,<2.0.0)", "mkdocs-material (>=8.1.4,<9.0.0)"] +test = ["black (>=22.3.0,<23.0.0)", "coverage (>=5.2,<6.0)", "isort (>=5.0.6,<6.0.0)", "mypy (==0.910)", "pytest (>=4.4.0,<5.4.0)", "pytest-cov (>=2.10.0,<3.0.0)", "pytest-sugar (>=0.9.4,<0.10.0)", "pytest-xdist (>=1.32.0,<2.0.0)", "shellingham (>=1.3.0,<2.0.0)"] [[package]] name = "typing-extensions" @@ -2198,8 +2253,8 @@ optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, <4" [package.extras] -brotli = ["brotlicffi (>=0.8.0)", 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