From 7638f3a594fe062a7029086c5311fd87c5c6d8ab Mon Sep 17 00:00:00 2001 From: Romain Ragonnet Date: Thu, 7 Sep 2023 14:19:21 +1000 Subject: [PATCH] Remove VNM data prior to local transmission --- autumn/projects/sm_covid2/common_school/project_maker.py | 2 ++ 1 file changed, 2 insertions(+) diff --git a/autumn/projects/sm_covid2/common_school/project_maker.py b/autumn/projects/sm_covid2/common_school/project_maker.py index 393a6ff2c..21a1e403f 100644 --- a/autumn/projects/sm_covid2/common_school/project_maker.py +++ b/autumn/projects/sm_covid2/common_school/project_maker.py @@ -282,6 +282,8 @@ def get_school_project_timeseries(iso3, sero_data): table_name="owid", conditions={"iso_code": iso3}, columns=["date", "new_deaths"] ) data = remove_death_outliers(iso3, data) + if iso3 == "VNM": # remove early data points associated with few deaths prior to local transmission + data = data[pd.to_datetime(data["date"]) >= "15 May 2021"] # apply moving average data["smoothed_new_deaths"] = data["new_deaths"].rolling(7).mean()[6:]