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Releases: moshi4/pyGenomeViz

v1.4.2

01 Dec 07:36
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Fixed

  • Fixed track segment separator position adjustment bug (#68)
  • Fixed to remove completely overlap alignment links

v1.4.1

26 Sep 15:41
fa4addc
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Fixed

  • Set encoding="utf-8" explicitly to avoid Windows default encoding issue (#63)
  • Fixed incorrect gz compressed file extension check logic (#64)

v1.4.0

14 Sep 03:47
cb5f1f6
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Added

  • Added extra_tooltip argument to add_feature() method explicitly (#61)
  • Added get_seqid2record() method to Fasta parser class

Changed

  • Dropped python3.8 support

Fixed

  • Fixed to skip mmseqs search for no cds genome (#58)
  • Fixed get_seqid2seq() method incorrect return type

v1.3.0

04 Aug 07:13
8a5a434
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New Functionality

  • Added theme option (light[default] or dark)
  • Added Fasta parser class
  • Added load_example_fasta_dataset() utility function
  • Added to_stack_features() helper function to avoid feature overlap

Bug Fix

  • Fixed to ignore features that have no location (#54)

v1.2.1

13 Jul 10:39
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Bug Fix

  • Fixed a bug that the dependent libraries for HTML viewer were not packaged correctly

v1.2.0

13 Jul 09:45
6aca995
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New Functionality

  • Added Features Table to HTML viewer experimentally (Demo Page)
  • Added unit argument to gv.set_scale_xticks() to enable choose Gb, Mb, Kb, bp unit
  • Added target_strand & target_range argument to gff.extract_exon_features()

Improvement

  • Improved HTML viewer code & UI design
  • Fixed to raise error in gv.savefig_html() for invalid figure
  • Switched package manager poetry to rye

v1.1.0

26 May 07:26
aee65af
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Improvement

  • Added reverse complement option to GUI

Bug Fix

  • Fixed unexpected sys.exit when calling aligner tool

v1.0.0

18 May 14:46
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Major Upgrade v1.0.0

See README and document for details.

v0.4.4

28 Oct 09:10
9f5d6f2
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Improvement

  • Added track.add_features() method

Bug Fix

  • Fixed a bug that caused an error in the GUI when uploaded files contain parentheses ().

v0.4.3

22 Sep 13:46
1c3560d
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Bug Fix

  • Fixed bug due to matplotlib v3.8.0 changes (#22)
  • Fixed savefig() to suppress memory leak during multiple plots