lineages.md

Summary of designated lineages

A

• parent: None
• defining SNPs: 19367T,48527A
• reference sequences:
  • MPXV-M5312_HM12_Rivers
  • MPXV-M2940_FCT
  • MK783031

A.1

• parent: A
• defining SNPs: 83326T
• reference sequences:
  • MT903342
  • MT903343
  • MT903345

A.1.1

• parent: A.1
• defining SNPs: 34459A
• reference sequence: MPXV_USA_2021_MD

A.2

• parent: A
• defining SNPs: 34472T
• reference sequence: MPXV/113/19

A.2.1

• parent: A.2
• defining SNPs: 25072T,140492C,179537T
• reference sequences:
  • MPXV_UK_2022_9000155
  • MPXV_USA_2022_FL001

A.2.2

• parent: A.2
• defining SNPs: 21991A,103019T,158424A
• reference sequences:
  • MPXV_USA_2022_PA0016
  • MPXV_UK_2022_9000166

A.2.3

• parent: A.2
• defining SNPs: 57284T,74226T
• reference sequences:
  • MPXV_USA_2021_TX
  • Monkeypox/PT0428/2022

A.3

• parent: A
• defining SNPs: 96841A,100971T
• reference sequences:
  • MPXV_Nig_2017_297957
  • MK783033

B.1

• parent: A.1.1
• defining SNPs: 77383A
• reference sequence: MPXV_USA_2022_MA001

B.1.1

• parent: B.1
• defining SNPs: 74360A
• reference sequence: MPXV/Germany/2022/RKI025

B.1.10

• parent: B.1
• defining SNPs: 89906T,94798A
• reference sequence: MPXV_UK_2022_9000147

B.1.11

• parent: B.1
• defining SNPs: 18133T,159277A
• reference sequence: MpxV/human/USA/WA-UW-070499/2022

B.1.12

• parent: B.1
• defining SNPs: 182950T
• reference sequences:
  • MpxV/human/CAN/UN-NML-3448/2022
  • MPX_BhVKjm_9000233

B.1.13

• parent: B.1
• defining SNPs: 175093A
• reference sequences:
  • MPXV-USA-IL-IDPH-002
  • MpxV/human/USA/OH-UW-073812/2022

B.1.14

• parent: B.1
• defining SNPs: 36617A,159779T
• reference sequence: MPXV/Germany/2022/RKI011

B.1.15

• parent: B.1
• defining SNPs: 149818A,151362A
• reference sequence: MPXV/Germany/2022/RKI018

B.1.16

• parent: B.1
• defining SNPs: 9389T,161797A,185557C
• reference sequences:
  • DC_INS_MPX_0082_L
  • ANT-LDSP-ANT-MPX-24561-E

B.1.17

• parent: B.1
• defining SNPs: 12169A,44960A
• reference sequence: hMPX/Human/USA/CA-LACPHL-MA00085/2022

B.1.18

• parent: B.1
• defining SNPs: 141757T,43706T,124690C
• reference sequence: MpxV/human/USA/WA-UW-083401/2022

B.1.19

• parent: B.1
• defining SNPs: 9963A,148268T
• reference sequence: ID6821

B.1.2

• parent: B.1
• defining SNPs: 186165A
• reference sequence: MPXV/Germany/2022/RKI124

B.1.20

• parent: B.1
• defining SNPs: 53326A,164385T,187620T
• reference sequence: MPXV_USA_2022_TX0040

B.1.21

• parent: B.1
• defining SNPs: 22415A,132698T
• reference sequence: MPX/Human/USA/CA-LACPHL-MA00153/2022

B.1.22

• parent: B.1
• defining SNPs: 34784T,101418T
• reference sequences:
  • MPXV/Germany/2022/ON/RKI903
  • MPXV/UZ_REGA_205/Belgium/2022

B.1.23

• parent: B.1
• defining SNPs: 27935A,64171G,73235T
• reference sequences:
  • WA-UW-288850
  • MPXV/PT0823/2024

B.1.3

• parent: B.1
• defining SNPs: 190660A
• reference sequence: MPxV/Prague_001/2022/flye_medaka

B.1.4

• parent: B.1
• defining SNPs: 34308A
• reference sequences:
  • MpxV/human/CAN/UN-NML-3214/2022
  • MpxV/human/CAN/UN-NML-2833/2022
  • MpxV/human/CAN/UN-NML-3532/2022

B.1.5

• parent: B.1
• defining SNPs: 70780T
• reference sequence: MPXV/Germany/2022/RKI162

B.1.6

• parent: B.1
• defining SNPs: 111029A
• reference sequence: LIM-INS-001

B.1.7

• parent: B.1
• defining SNPs: 25644T
• reference sequence: MPXV_UK_2022_9000078

B.1.8

• parent: B.1
• defining SNPs: 5595A,191615T
• reference sequence: MPXV/Germany/2022/RKI235

B.1.9

• parent: B.1
• defining SNPs: 181367A
• reference sequence: Monkeypox/PT0043/2022

C.1

• parent: B.1.3
• defining SNPs: 105923A,64426T,55133A
• reference sequence: MPXV/human/Japan/Tokyo/2022/TKY220165

C.1.1

• parent: C.1
• defining SNPs: 21062T,149963T
• reference sequences:
  • MPV/Human/USA/CA-LACPHL-MA00563/2023
  • MPV/PT0706/2023

D.1

• parent: B.1.6
• defining SNPs: 10945A,39515A,44627T,56276A
• reference sequence: MPXV/Human/USA/CA-LACPHL-MA00408/2023

E.1

• parent: C.1.1
• defining SNPs: 13563A,121394T,162280A
• reference sequence: MPV/PT0732/2023

E.2

• parent: C.1.1
• defining SNPs: 13563A,151847A,37738T
• reference sequence: MPXV/PT0661/2023

E.3

• parent: C.1.1
• defining SNPs: 142797T
• reference sequence: MPXV/PT0627/2023

F.1

• parent: B.1.20
• defining SNPs: 11668A,35132A,70414T,70666T,96938T
• reference sequence: NY-NYCPHL-001231

F.2

• parent: B.1.20
• defining SNPs: 161629A,22167T
• reference sequence: hMpxV/USA/CA-CDPH-1M1000491/2023

F.3

• parent: B.1.20
• defining SNPs: 174050T,180618T
• reference sequence: hMpxV/USA/IL-RIPHL-MPXV-050-0081/2023

F.4

• parent: B.1.20
• defining SNPs: 34277T,92382T,122551T,126919A,176643A
• reference sequence: hMpxV/USA/IL-RIPHL-050-0153/2024

F.5

• parent: B.1.20
• defining SNPs: 150831T,126169A
• reference sequences:
  • hMpxV/USA/CA-CDPH-1M1000492/2023
  • NY-NYCPHL-001278

F.6

• parent: B.1.20
• defining SNPs: 146690A,159608T,168964A
• reference sequence: MpxV/human/USA/WA-UW-097833/2023