tfpscanner 0.3.0 2023-07-06

Feature: function create_browser_data() was added to generate all treeview illustrations and metadata required by the tfpbrowser app, this replaces the update_data() function in {tfpbrowser}
Fix: all_mutations.csv and defining_mutations.csv are added to ./mutations output directory rather than ./treeview subdirectory (as required by tfpbrowser)

tfpscanner 0.2.2 2023-01-18

Interactive tree view plots can be saved in either html (as an htmlwidget) or rds (as a ggtree object) files
Cluster SINA plots and interactive tree view plots are saved as both html and rds by default

tfpscanner 0.2.1 2022-12-06

"Cluster sina plot"s can be saved in either html (as an htmlwidget) or rds (as a ggplot2 object) files

tfpscanner 0.2.0 2022-11-09

Breaking change: htmlwidgets are no longer saved to file by treeview()
Breaking change: date of creation is absent from the "tree-..." files created by treeview()
Breaking change: create_trees() no longer creates htmlwidget tree-views
treeview() now saves ggtree objects to tree-xyz.rds files, these can be converted to htmlwidgets using ggiraph::girafe
save_trees() returns the file paths for any files that it creates

tfpscanner 0.1.7 2022-11-09

Separate the function for creating and saving tree plots from the treeview function

tfpscanner 0.1.6 2022-11-09

Split up the .plot_tree function into smaller components

tfpscanner 0.1.5 2022-11-07

Separate the function for plotting sina cluster data from the treeview function

tfpscanner 0.1.4 2022-11-07

Add testthat and pre-commit infrastructure

tfpscanner 0.1.3 2022-11-01

Integrate changes from mrc-ide repo with those in Jumping Rivers repo
Styling with styler
Fix some undocumented parameters

tfpscanner 0.1.2 2022-10-03

Revise sina plot
Output sina for more variables
Move doMPI to a suggested dependency

tfpscanner 0.1.1 2022-09-26

Add linting
Add namespacing
Pass R CMD Check
Add system requirements

tfpscanner 0.1.0 2022-07-03

Fix description file
Removelibrary() calls