###PrediXmod ###Pipeline to develop prediction models for GTEX data and cross-validation
-Instructions for downloading expression and genotype data from GTEx exchange area are listed in gtex.md
-Descriptions of scripts that execute steps in gene prediction model development pipeline shown below:
- for all autosomal SNPs combined in one file: 1_vcf2dosage.mach_gtex_hapmapSNPs.pl
- for separate files per autosome: 1_vcf2dosage.mach.chr_gtex_hapmapSNPs.pl
- 2_pull_protein_coding_RPKM_rebuild.pl
- 3_calc_PEER_adj_exp.r
- 4_CV_GTEx_lasso_adjusted.r
- 8_CV_GTEX_polyscore_adjusted.r