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WGD status being used from hisens run in gene-level script? #65

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arichards2564 opened this issue Mar 17, 2024 · 0 comments
Open

WGD status being used from hisens run in gene-level script? #65

arichards2564 opened this issue Mar 17, 2024 · 0 comments

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@arichards2564
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facets-suite/R/gene-level-changes.R

Line 45 in 7d54d0f

fcna_output = calculate_fraction_cna(segs, ploidy, genome, algorithm)

While generally unlikely, if we're using the WGD derived from the segments from the hisens run, this could conflict with the overall call of WGD where we use the purity run
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