From 550be85ff2a26a8666b54c13854b1152faf95784 Mon Sep 17 00:00:00 2001
From: Cyriac Kandoth <ckandoth@gmail.com>
Date: Mon, 20 Jul 2020 10:18:02 -0700
Subject: [PATCH] Upgrade clear linux, conda, and VEP in Dockerfile

---
 Dockerfile | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index ceed393..00b14fb 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -1,7 +1,7 @@
 FROM clearlinux:latest AS builder
 
 # Install a minimal versioned OS into /install_root, and bundled tools if any
-ENV CLEAR_VERSION=32820
+ENV CLEAR_VERSION=33490
 RUN swupd os-install --no-progress --no-boot-update --no-scripts \
     --version ${CLEAR_VERSION} \
     --path /install_root \
@@ -9,13 +9,13 @@ RUN swupd os-install --no-progress --no-boot-update --no-scripts \
     --bundles os-core-update,which
 
 # Download and install conda into /usr/bin
-ENV MINICONDA_VERSION=py38_4.8.2
+ENV MINICONDA_VERSION=py37_4.8.3
 RUN swupd bundle-add --no-progress curl && \
     curl -sL https://repo.anaconda.com/miniconda/Miniconda3-${MINICONDA_VERSION}-Linux-x86_64.sh -o /tmp/miniconda.sh && \
     sh /tmp/miniconda.sh -bfp /usr
 
 # Use conda to install remaining tools/dependencies into /usr/local
-ENV VEP_VERSION=99.2 \
+ENV VEP_VERSION=100.3 \
     HTSLIB_VERSION=1.9 \
     BCFTOOLS_VERSION=1.9 \
     SAMTOOLS_VERSION=1.9