test bio3d_pca 2.3.4

[jennaj]

toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_pca/bio3d_pca/2.3.4

[jennaj]

/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_pca/bio3d_pca/2.3.4

[jennaj]

Hum. Tests are not running. Needs follow up later. Might have been a problem since mid-August.

Eu (works fine): https://usegalaxy.eu/u/jenj/h/test-analysis-md-simulations

Org (tool fails and has a command-line): https://usegalaxy.org/u/jen/h/test-analysis-md-simulations

stderr

/corral4/main/jobs/046/048/46048831/tool_script.sh: line 9: Rscript: not found

[mvdbeek]

Results (powered by Planemo)

Summary

State	Count
Total	1
Passed	0
Error	0
Failure	1
Skipped	0

Failed s

• ❌ toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_pca/bio3d_pca (Test tool test #1)

  Problems:

  • Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_pca/bio3d_pca/2.3.4, exit_code: 127, stderr: .
    

  • Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_pca/bio3d_pca/2.3.4, exit_code: 127, stderr: .
    

  Command Line:

  Exit Code:

  • 127

  Standard Output:

  • /corral4/main/jobs/046/052/46052482/tool_script.sh: line 9: Rscript: not found
    

  Job Parameters:

  • Job parameter	Parameter value
    method	"false"
    pca	{"__current_case__": 0, "sele": "calpha"}
    chromInfo	"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"
    dbkey	"?"
    __input_ext	"dcd"

[jennaj]

/run-tool-test tool_id=toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_pca/bio3d_pca/2.3.4

[mvdbeek]

Results (powered by Planemo)

Summary

State	Count
Total	1
Passed	0
Error	0
Failure	1
Skipped	0

Failed s

• ❌ toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_pca/bio3d_pca (Test tool test #1)

  Problems:

  • Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_pca/bio3d_pca/2.3.4, exit_code: 127, stderr: .
    

  • Job in error state.. tool_id: toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_pca/bio3d_pca/2.3.4, exit_code: 127, stderr: .
    

  Command Line:

  Exit Code:

  • 127

  Standard Output:

  • /corral4/main/jobs/046/196/46196439/tool_script.sh: line 9: Rscript: not found
    

  Job Parameters:

  • Job parameter	Parameter value
    method	"false"
    pca	{"__current_case__": 0, "sele": "calpha"}
    chromInfo	"/cvmfs/data.galaxyproject.org/managed/len/ucsc/?.len"
    dbkey	"?"
    __input_ext	"dcd"