diff --git a/.copier-answers.yml b/.copier-answers.yml new file mode 100644 index 0000000..7a1b078 --- /dev/null +++ b/.copier-answers.yml @@ -0,0 +1,19 @@ +# Changes here will be overwritten by Copier; NEVER EDIT MANUALLY +_commit: v4.0.4 +_src_path: https://github.com/jupyterlab/extension-template +author_email: marc.wouts@gmail.com +author_name: Marc Wouts +data_format: string +file_extension: '' +has_binder: false +has_settings: false +kind: frontend +labextension_name: jupyterlab-jupytext +mimetype: '' +mimetype_name: '' +project_short_description: A JupyterLab extension for Jupytext +python_name: jupyterlab_jupytext +repository: https://github.com/mwouts/jupyterlab-jupytext +test: true +viewer_name: '' + diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml new file mode 100644 index 0000000..cdc5e16 --- /dev/null +++ b/.github/workflows/build.yml @@ -0,0 +1,150 @@ +name: Build + +on: + push: + branches: main + pull_request: + branches: '*' + +jobs: + build: + runs-on: ubuntu-latest + + steps: + - name: Checkout + uses: actions/checkout@v3 + + - name: Base Setup + uses: jupyterlab/maintainer-tools/.github/actions/base-setup@v1 + + - name: Install dependencies + run: python -m pip install -U "jupyterlab>=4.0.0b0,<5" + + - name: Lint the extension + run: | + set -eux + jlpm + jlpm run lint:check + + - name: Test the extension + run: | + set -eux + jlpm run test + + - name: Build the extension + run: | + set -eux + python -m pip install .[test] + + jupyter labextension list + jupyter labextension list 2>&1 | grep -ie "jupyterlab-jupytext.*OK" + python -m jupyterlab.browser_check + + - name: Package the extension + run: | + set -eux + + pip install build + python -m build + pip uninstall -y "jupyterlab_jupytext" jupyterlab + + - name: Upload extension packages + uses: actions/upload-artifact@v3 + with: + name: extension-artifacts + path: dist/jupyterlab_jupytext* + if-no-files-found: error + + test_isolated: + needs: build + runs-on: ubuntu-latest + + steps: + - name: Checkout + uses: actions/checkout@v3 + - name: Install Python + uses: actions/setup-python@v4 + with: + python-version: '3.9' + architecture: 'x64' + - uses: actions/download-artifact@v3 + with: + name: extension-artifacts + - name: Install and Test + run: | + set -eux + # Remove NodeJS, twice to take care of system and locally installed node versions. + sudo rm -rf $(which node) + sudo rm -rf $(which node) + + pip install "jupyterlab>=4.0.0b0,<5" jupyterlab_jupytext*.whl + + + jupyter labextension list + jupyter labextension list 2>&1 | grep -ie "jupyterlab-jupytext.*OK" + python -m jupyterlab.browser_check --no-browser-test + + integration-tests: + name: Integration tests + needs: build + runs-on: ubuntu-latest + + env: + PLAYWRIGHT_BROWSERS_PATH: ${{ github.workspace }}/pw-browsers + + steps: + - name: Checkout + uses: actions/checkout@v3 + + - name: Base Setup + uses: jupyterlab/maintainer-tools/.github/actions/base-setup@v1 + + - name: Download extension package + uses: actions/download-artifact@v3 + with: + name: extension-artifacts + + - name: Install the extension + run: | + set -eux + python -m pip install "jupyterlab>=4.0.0b0,<5" jupyterlab_jupytext*.whl + + - name: Install dependencies + working-directory: ui-tests + env: + PLAYWRIGHT_SKIP_BROWSER_DOWNLOAD: 1 + run: jlpm install + + - name: Set up browser cache + uses: actions/cache@v3 + with: + path: | + ${{ github.workspace }}/pw-browsers + key: ${{ runner.os }}-${{ hashFiles('ui-tests/yarn.lock') }} + + - name: Install browser + run: jlpm playwright install chromium + working-directory: ui-tests + + - name: Execute integration tests + working-directory: ui-tests + run: | + jlpm playwright test + + - name: Upload Playwright Test report + if: always() + uses: actions/upload-artifact@v3 + with: + name: jupyterlab_jupytext-playwright-tests + path: | + ui-tests/test-results + ui-tests/playwright-report + + check_links: + name: Check Links + runs-on: ubuntu-latest + timeout-minutes: 15 + steps: + - uses: actions/checkout@v3 + - uses: jupyterlab/maintainer-tools/.github/actions/base-setup@v1 + - uses: jupyterlab/maintainer-tools/.github/actions/check-links@v1 diff --git a/.github/workflows/check-release.yml b/.github/workflows/check-release.yml new file mode 100644 index 0000000..f35aad0 --- /dev/null +++ b/.github/workflows/check-release.yml @@ -0,0 +1,29 @@ +name: Check Release +on: + push: + branches: ["main"] + pull_request: + branches: ["*"] + +jobs: + check_release: + runs-on: ubuntu-latest + steps: + - name: Checkout + uses: actions/checkout@v3 + - name: Base Setup + uses: jupyterlab/maintainer-tools/.github/actions/base-setup@v1 + - name: Install Dependencies + run: | + pip install -e . + - name: Check Release + uses: jupyter-server/jupyter_releaser/.github/actions/check-release@v2 + with: + + token: ${{ secrets.GITHUB_TOKEN }} + + - name: Upload Distributions + uses: actions/upload-artifact@v3 + with: + name: jupyterlab_jupytext-releaser-dist-${{ github.run_number }} + path: .jupyter_releaser_checkout/dist diff --git a/.github/workflows/enforce-label.yml b/.github/workflows/enforce-label.yml new file mode 100644 index 0000000..725feab --- /dev/null +++ b/.github/workflows/enforce-label.yml @@ -0,0 +1,13 @@ +name: Enforce PR label + +on: + pull_request: + types: [labeled, unlabeled, opened, edited, synchronize] +jobs: + enforce-label: + runs-on: ubuntu-latest + permissions: + pull-requests: write + steps: + - name: enforce-triage-label + uses: jupyterlab/maintainer-tools/.github/actions/enforce-label@v1 diff --git a/.github/workflows/prep-release.yml b/.github/workflows/prep-release.yml new file mode 100644 index 0000000..7a2a18d --- /dev/null +++ b/.github/workflows/prep-release.yml @@ -0,0 +1,42 @@ +name: "Step 1: Prep Release" +on: + workflow_dispatch: + inputs: + version_spec: + description: "New Version Specifier" + default: "next" + required: false + branch: + description: "The branch to target" + required: false + post_version_spec: + description: "Post Version Specifier" + required: false + since: + description: "Use PRs with activity since this date or git reference" + required: false + since_last_stable: + description: "Use PRs with activity since the last stable git tag" + required: false + type: boolean +jobs: + prep_release: + runs-on: ubuntu-latest + steps: + - uses: jupyterlab/maintainer-tools/.github/actions/base-setup@v1 + + - name: Prep Release + id: prep-release + uses: jupyter-server/jupyter_releaser/.github/actions/prep-release@v2 + with: + token: ${{ secrets.ADMIN_GITHUB_TOKEN }} + version_spec: ${{ github.event.inputs.version_spec }} + post_version_spec: ${{ github.event.inputs.post_version_spec }} + target: ${{ github.event.inputs.target }} + branch: ${{ github.event.inputs.branch }} + since: ${{ github.event.inputs.since }} + since_last_stable: ${{ github.event.inputs.since_last_stable }} + + - name: "** Next Step **" + run: | + echo "Optional): Review Draft Release: ${{ steps.prep-release.outputs.release_url }}" diff --git a/.github/workflows/publish-release.yml b/.github/workflows/publish-release.yml new file mode 100644 index 0000000..dbaaeaa --- /dev/null +++ b/.github/workflows/publish-release.yml @@ -0,0 +1,54 @@ +name: "Step 2: Publish Release" +on: + workflow_dispatch: + inputs: + branch: + description: "The target branch" + required: false + release_url: + description: "The URL of the draft GitHub release" + required: false + steps_to_skip: + description: "Comma separated list of steps to skip" + required: false + +jobs: + publish_release: + runs-on: ubuntu-latest + steps: + - uses: jupyterlab/maintainer-tools/.github/actions/base-setup@v1 + + - name: Populate Release + id: populate-release + uses: jupyter-server/jupyter_releaser/.github/actions/populate-release@v2 + with: + token: ${{ secrets.ADMIN_GITHUB_TOKEN }} + target: ${{ github.event.inputs.target }} + branch: ${{ github.event.inputs.branch }} + release_url: ${{ github.event.inputs.release_url }} + steps_to_skip: ${{ github.event.inputs.steps_to_skip }} + + - name: Finalize Release + id: finalize-release + env: + PYPI_TOKEN: ${{ secrets.PYPI_TOKEN }} + PYPI_TOKEN_MAP: ${{ secrets.PYPI_TOKEN_MAP }} + TWINE_USERNAME: __token__ + NPM_TOKEN: ${{ secrets.NPM_TOKEN }} + uses: jupyter-server/jupyter-releaser/.github/actions/finalize-release@v2 + with: + token: ${{ secrets.ADMIN_GITHUB_TOKEN }} + target: ${{ github.event.inputs.target }} + release_url: ${{ steps.populate-release.outputs.release_url }} + + - name: "** Next Step **" + if: ${{ success() }} + run: | + echo "Verify the final release" + echo ${{ steps.finalize-release.outputs.release_url }} + + - name: "** Failure Message **" + if: ${{ failure() }} + run: | + echo "Failed to Publish the Draft Release Url:" + echo ${{ steps.populate-release.outputs.release_url }} diff --git a/.github/workflows/update-integration-tests.yml b/.github/workflows/update-integration-tests.yml new file mode 100644 index 0000000..52c6723 --- /dev/null +++ b/.github/workflows/update-integration-tests.yml @@ -0,0 +1,47 @@ +name: Update Playwright Snapshots + +on: + issue_comment: + types: [created, edited] + +permissions: + contents: write + pull-requests: write + +jobs: + update-snapshots: + if: ${{ github.event.issue.pull_request && contains(github.event.comment.body, 'please update playwright snapshots') }} + runs-on: ubuntu-latest + + steps: + - name: Checkout + uses: actions/checkout@v3 + with: + token: ${{ secrets.GITHUB_TOKEN }} + + - name: Configure git to use https + run: git config --global hub.protocol https + + - name: Checkout the branch from the PR that triggered the job + run: hub pr checkout ${{ github.event.issue.number }} + env: + GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} + + - name: Base Setup + uses: jupyterlab/maintainer-tools/.github/actions/base-setup@v1 + + - name: Install dependencies + run: python -m pip install -U "jupyterlab>=4.0.0b0,<5" + + - name: Install extension + run: | + set -eux + jlpm + python -m pip install . + + - uses: jupyterlab/maintainer-tools/.github/actions/update-snapshots@v1 + with: + github_token: ${{ secrets.GITHUB_TOKEN }} + # Playwright knows how to start JupyterLab server + start_server_script: 'null' + test_folder: ui-tests diff --git a/.gitignore b/.gitignore index 41a37ae..1b3b3c0 100644 --- a/.gitignore +++ b/.gitignore @@ -1,6 +1,132 @@ +# PyCharm +.idea + +# VS Code +.vscode + + *.bundle.* lib/ node_modules/ +*.log +.eslintcache +.stylelintcache *.egg-info/ .ipynb_checkpoints -yarn.lock +*.tsbuildinfo +jupyterlab_jupytext/labextension +# Version file is handled by hatchling +jupyterlab_jupytext/_version.py + +# Integration tests +ui-tests/test-results/ +ui-tests/playwright-report/ + +# Created by https://www.gitignore.io/api/python +# Edit at https://www.gitignore.io/?templates=python + +### Python ### +# Byte-compiled / optimized / DLL files +__pycache__/ +*.py[cod] +*$py.class + +# C extensions +*.so + +# Distribution / packaging +.Python +build/ +develop-eggs/ +dist/ +downloads/ +eggs/ +.eggs/ +lib/ +lib64/ +parts/ +sdist/ +var/ +wheels/ +pip-wheel-metadata/ +share/python-wheels/ +.installed.cfg +*.egg +MANIFEST + +# PyInstaller +# Usually these files are written by a python script from a template +# before PyInstaller builds the exe, so as to inject date/other infos into it. +*.manifest +*.spec + +# Installer logs +pip-log.txt +pip-delete-this-directory.txt + +# Unit test / coverage reports +htmlcov/ +.tox/ +.nox/ +.coverage +.coverage.* +.cache +nosetests.xml +coverage/ +coverage.xml +*.cover +.hypothesis/ +.pytest_cache/ + +# Translations +*.mo +*.pot + +# Scrapy stuff: +.scrapy + +# Sphinx documentation +docs/_build/ + +# PyBuilder +target/ + +# pyenv +.python-version + +# celery beat schedule file +celerybeat-schedule + +# SageMath parsed files +*.sage.py + +# Spyder project settings +.spyderproject +.spyproject + +# Rope project settings +.ropeproject + +# Mr Developer +.mr.developer.cfg +.project +.pydevproject + +# mkdocs documentation +/site + +# mypy +.mypy_cache/ +.dmypy.json +dmypy.json + +# Pyre type checker +.pyre/ + +# End of https://www.gitignore.io/api/python + +# OSX files +.DS_Store + +# Yarn cache +.yarn/ diff --git a/.prettierignore b/.prettierignore new file mode 100644 index 0000000..88b6175 --- /dev/null +++ b/.prettierignore @@ -0,0 +1,6 @@ +node_modules +**/node_modules +**/lib +**/package.json +!/package.json +jupyterlab_jupytext diff --git a/.yarnrc.yml b/.yarnrc.yml new file mode 100644 index 0000000..fe1125f --- /dev/null +++ b/.yarnrc.yml @@ -0,0 +1,3 @@ +enableImmutableInstalls: false + +nodeLinker: node-modules diff --git a/CHANGELOG.md b/CHANGELOG.md new file mode 100644 index 0000000..c9d987b --- /dev/null +++ b/CHANGELOG.md @@ -0,0 +1,103 @@ +# Changelog + + + + + +# 1.4.0 + +- The JupyterLab extension for Jupytext now works with Jupyter Lab 4.0 +- We have moved the extension back to https://github.com/mwouts/jupyterlab-jupytext + +# 1.3.8+dev + +- We updated the `yarn.lock` file for the jupyter lab extension to address security vulnerabilities ([#904](https://github.com/mwouts/jupytext/issues/904), [#925](https://github.com/mwouts/jupytext/issues/925), [#935](https://github.com/mwouts/jupytext/issues/935), [#939](https://github.com/mwouts/jupytext/issues/939), [#984](https://github.com/mwouts/jupytext/issues/984), [#1005](https://github.com/mwouts/jupytext/issues/1005), [#1011](https://github.com/mwouts/jupytext/issues/1011), [#1030](https://github.com/mwouts/jupytext/issues/1030), [#1036](https://github.com/mwouts/jupytext/issues/1036)) + +# 1.3.8 (2021-12-03) + +- The "Jupytext Notebook" factory that lets the user configure the Notebook viewer as the default for text notebooks accepts more filetypes: "myst", "r-markdown" and "quarto" ([#803](https://github.com/mwouts/jupytext/issues/803)) + +# 1.3.7 (2021-11-30) + +The extension for Jupyter Lab benefited from a series of improvements contributed by [Frédéric Collonval](https://github.com/fcollonval): +- A new "Jupytext Notebook" factory offers the option to open text notebooks directly with the notebook view (#803). To use it, follow the instructions in the [documentation](https://github.com/mwouts/jupytext/blob/main/docs/index.md#Install). +- The ICommandPalette is optional, for compatibility with RISE within JupyterLab [RISE#605](https://github.com/damianavila/RISE/pull/605) +- Added support for translation. + +We also upgraded the extension dependency and especially `json-schema` to address a security vulnerability. + +# 1.3.6 (2021-09-23) + +- We have upgraded the extension dependencies and especially `ansi-regex` to fix a security vulnerability (#857) + +# 1.3.5 (2021-09-05) + +- The extension can pair notebooks with `.qmd` files (Quarto format) (#837) + +# 1.3.4 (2021-08-31) + +- We have upgraded the extension dependencies and especially `tar` and `url-parse` to fix two security vulnerabilities (#842) (#843) + +# 1.3.3 (2021-06-10) + +- We have upgraded the extension dependencies and especially `ws` to fix a security vulnerability (#798) + +# 1.3.2 (2021-05-21) + +- We have upgraded the extension dependencies and especially `hosted-git-info` to fix a security vulnerability (#783) + +# 1.3.1 (2021-03-07) + +- We have updated `yarn.lock` to upgrade `marked` to `2.0` and fix a moderate vulnerability in the extension dependencies (#750) + +# 1.3.0 (2021-01-05) + +- The `jupyterlab-jupytext` extension is now distributed using `jupyter-packaging`, thanks to Martin Renou's awesome contribution (#683). + +# 1.2.3 (2020-10-14) + +- Remove duplicate `jupyterlab` entry in `package.json` (#654) + +# 1.2.2 (2020-10-13) + +- The description of the `jupyterlab-jupytext` extension was updated (#654) +- The explicit dependency on the `jupytext` Python package was documented in `package.json` (#654) + +# 1.2.1 (2020-03-18) + +- The extension can pair a notebook to the new MyST Markdown format, developed by the [ExecutableBookProject](https://github.com/ExecutableBookProject) team. Thanks to Chris Sewell for his PRs! (#447 #456 #458) + +# 1.2.0 (2020-03-09) + +- This version of the extension is compatible with JupyterLab 2.0. Many thanks to Jean Helie! (#449) + +# 1.1.1 (2019-12-26) + +- The `nomarker` format is available through the Jupytext commands (requires `jupytext>=1.3.1`). + +# 1.1.0 (2019-11-03) + +- Multiple pairings are supported (#290) +- The documentation includes the last version numbers for both Jupytext Python and for this extension (#311) +- Documentation says clearly that the extension is bundled with the Python package (#350) + +# 1.0.2 (2019-07-18) + +- Fixed an incorrect `target_format` entry inserted by the version 1.0.1 of the extension. + +# 1.0.1 (2019-07-18) + +- A click on a selected format toggle the pairing (#289) +- Use `JupyterFrontEnd` and `JupyterFrontEndPlugin` from `@jupyterlab/application` rather than `JupyterLab` and `JupyterLabPlugin` for compatibility with JupyterLab 1.0. + +# 1.0.0 (2019-07-06) + +- First extension compatible with JupyterLab 1.0 + +# 0.19.0 (2019-07-06) + +- Last extension compatible with JupyterLab 0.35 + +# 0.1.0 (2018-10-02) + +- Initial release of the extension diff --git a/LICENSE b/LICENSE index 2ebfbf7..032fa1a 100644 --- a/LICENSE +++ b/LICENSE @@ -1,6 +1,6 @@ MIT License -Copyright (c) 2019 Marc Wouts +Copyright (c) 2019-2023 Marc Wouts Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal diff --git a/README.md b/README.md index 867236c..179dcf0 100644 --- a/README.md +++ b/README.md @@ -1,15 +1,96 @@ -# A JupyterLab extension for Jupytext +# jupyterlab_jupytext -> :warning: This repository is not up-to-date. The extension is now developed in the main [Jupytext](https://github.com/mwouts/jupytext) repository, under [packages/labextension](https://github.com/mwouts/jupytext/tree/master/packages/labextension) +[![Github Actions Status](https://github.com/mwouts/jupyterlab-jupytext/workflows/Build/badge.svg)](https://github.com/mwouts/jupyterlab-jupytext/actions/workflows/build.yml) +A JupyterLab extension for Jupytext -This extension adds a few [Jupytext](https://github.com/mwouts/jupytext) commands to the command palette. Use these to select the desired ipynb/text pairing for your notebook. +## Requirements -![Jupytext commands](https://github.com/mwouts/jupytext/raw/master/packages/labextension/jupytext_commands.png) +- JupyterLab >= 4.0.0b0 -## Installation +## Install -The extension is bundled with [Jupytext](https://github.com/mwouts/jupytext/). Please follow the installation instructions for Jupytext. +To install the extension, execute: -# How to develop this extension +```bash +pip install jupyterlab_jupytext +``` -See the [README.md](https://github.com/mwouts/jupytext/blob/master/packages/labextension/README.md) in the `packages/labextension` subfolder of the [Jupytext](https://github.com/mwouts/jupytext/) project. +## Uninstall + +To remove the extension, execute: + +```bash +pip uninstall jupyterlab_jupytext +``` + +## Contributing + +### Development install + +Note: You will need NodeJS to build the extension package. + +The `jlpm` command is JupyterLab's pinned version of +[yarn](https://yarnpkg.com/) that is installed with JupyterLab. You may use +`yarn` or `npm` in lieu of `jlpm` below. + +```bash +# Clone the repo to your local environment +# Change directory to the jupyterlab_jupytext directory +# Install package in development mode +pip install -e "." +# Link your development version of the extension with JupyterLab +jupyter labextension develop . --overwrite +# Rebuild extension Typescript source after making changes +jlpm build +``` + +You can watch the source directory and run JupyterLab at the same time in different terminals to watch for changes in the extension's source and automatically rebuild the extension. + +```bash +# Watch the source directory in one terminal, automatically rebuilding when needed +jlpm watch +# Run JupyterLab in another terminal +jupyter lab +``` + +With the watch command running, every saved change will immediately be built locally and available in your running JupyterLab. Refresh JupyterLab to load the change in your browser (you may need to wait several seconds for the extension to be rebuilt). + +By default, the `jlpm build` command generates the source maps for this extension to make it easier to debug using the browser dev tools. To also generate source maps for the JupyterLab core extensions, you can run the following command: + +```bash +jupyter lab build --minimize=False +``` + +### Development uninstall + +```bash +pip uninstall jupyterlab_jupytext +``` + +In development mode, you will also need to remove the symlink created by `jupyter labextension develop` +command. To find its location, you can run `jupyter labextension list` to figure out where the `labextensions` +folder is located. Then you can remove the symlink named `jupyterlab-jupytext` within that folder. + +### Testing the extension + +#### Frontend tests + +This extension is using [Jest](https://jestjs.io/) for JavaScript code testing. + +To execute them, execute: + +```sh +jlpm +jlpm test +``` + +#### Integration tests + +This extension uses [Playwright](https://playwright.dev/docs/intro/) for the integration tests (aka user level tests). +More precisely, the JupyterLab helper [Galata](https://github.com/jupyterlab/jupyterlab/tree/master/galata) is used to handle testing the extension in JupyterLab. + +More information are provided within the [ui-tests](./ui-tests/README.md) README. + +### Packaging the extension + +See [RELEASE](RELEASE.md) diff --git a/RELEASE.md b/RELEASE.md new file mode 100644 index 0000000..2c14163 --- /dev/null +++ b/RELEASE.md @@ -0,0 +1,65 @@ +# Making a new release of jupyterlab_jupytext + +The extension can be published to `PyPI` and `npm` manually or using the [Jupyter Releaser](https://github.com/jupyter-server/jupyter_releaser). + +## Manual release + +### Python package + +This extension can be distributed as Python packages. All of the Python +packaging instructions are in the `pyproject.toml` file to wrap your extension in a +Python package. Before generating a package, you first need to install some tools: + +```bash +pip install build twine hatch +``` + +Bump the version using `hatch`. By default this will create a tag. +See the docs on [hatch-nodejs-version](https://github.com/agoose77/hatch-nodejs-version#semver) for details. + +```bash +hatch version +``` + +To create a Python source package (`.tar.gz`) and the binary package (`.whl`) in the `dist/` directory, do: + +```bash +python -m build +``` + +> `python setup.py sdist bdist_wheel` is deprecated and will not work for this package. + +Then to upload the package to PyPI, do: + +```bash +twine upload dist/* +``` + +### NPM package + +To publish the frontend part of the extension as a NPM package, do: + +```bash +npm login +npm publish --access public +``` + +## Automated releases with the Jupyter Releaser + +The extension repository should already be compatible with the Jupyter Releaser. + +Check out the [workflow documentation](https://jupyter-releaser.readthedocs.io/en/latest/get_started/making_release_from_repo.html) for more information. + +Here is a summary of the steps to cut a new release: + +- Add `ADMIN_GITHUB_TOKEN`, `PYPI_TOKEN` and `NPM_TOKEN` to the [Github Secrets](https://docs.github.com/en/actions/security-guides/encrypted-secrets) in the repository +- Go to the Actions panel +- Run the "Step 1: Prep Release" workflow +- Check the draft changelog +- Run the "Step 2: Publish Release" workflow + +## Publishing to `conda-forge` + +If the package is not on conda forge yet, check the documentation to learn how to add it: https://conda-forge.org/docs/maintainer/adding_pkgs.html + +Otherwise a bot should pick up the new version publish to PyPI, and open a new PR on the feedstock repository automatically. diff --git a/babel.config.js b/babel.config.js new file mode 100644 index 0000000..8b5c764 --- /dev/null +++ b/babel.config.js @@ -0,0 +1 @@ +module.exports = require('@jupyterlab/testutils/lib/babel.config'); diff --git a/install.json b/install.json new file mode 100644 index 0000000..b5372d1 --- /dev/null +++ b/install.json @@ -0,0 +1,5 @@ +{ + "packageManager": "python", + "packageName": "jupyterlab_jupytext", + "uninstallInstructions": "Use your Python package manager (pip, conda, etc.) to uninstall the package jupyterlab_jupytext" +} diff --git a/jest.config.js b/jest.config.js new file mode 100644 index 0000000..b0471e6 --- /dev/null +++ b/jest.config.js @@ -0,0 +1,28 @@ +const jestJupyterLab = require('@jupyterlab/testutils/lib/jest-config'); + +const esModules = [ + '@codemirror', + '@jupyter/ydoc', + '@jupyterlab/', + 'lib0', + 'nanoid', + 'vscode-ws-jsonrpc', + 'y-protocols', + 'y-websocket', + 'yjs' +].join('|'); + +const baseConfig = jestJupyterLab(__dirname); + +module.exports = { + ...baseConfig, + automock: false, + collectCoverageFrom: [ + 'src/**/*.{ts,tsx}', + '!src/**/*.d.ts', + '!src/**/.ipynb_checkpoints/*' + ], + coverageReporters: ['lcov', 'text'], + testRegex: 'src/.*/.*.spec.ts[x]?$', + transformIgnorePatterns: [`/node_modules/(?!${esModules}).+`] +}; diff --git a/jupyterlab_jupytext/__init__.py b/jupyterlab_jupytext/__init__.py new file mode 100644 index 0000000..1984c5e --- /dev/null +++ b/jupyterlab_jupytext/__init__.py @@ -0,0 +1,8 @@ +from ._version import __version__ + + +def _jupyter_labextension_paths(): + return [{ + "src": "labextension", + "dest": "jupyterlab-jupytext" + }] diff --git a/jupytext_commands.png b/jupytext_commands.png deleted file mode 100644 index 98e1992..0000000 Binary files a/jupytext_commands.png and /dev/null differ diff --git a/package.json b/package.json index e19b6ec..fda623b 100644 --- a/package.json +++ b/package.json @@ -1,6 +1,6 @@ { "name": "jupyterlab-jupytext", - "version": "0.1.0", + "version": "1.4.0-a1", "description": "A JupyterLab extension for Jupytext", "keywords": [ "jupyter", @@ -11,34 +11,179 @@ "bugs": { "url": "https://github.com/mwouts/jupyterlab-jupytext/issues" }, - "license": "BSD-3-Clause", - "author": "Marc Wouts", + "license": "MIT", + "author": { + "name": "Marc Wouts", + "email": "marc.wouts@gmail.com" + }, "files": [ "lib/**/*.{d.ts,eot,gif,html,jpg,js,js.map,json,png,svg,woff2,ttf}", - "style/**/*.{css,eot,gif,html,jpg,json,png,svg,woff2,ttf}" + "style/**/*.{css,js,eot,gif,html,jpg,json,png,svg,woff2,ttf}" ], "main": "lib/index.js", "types": "lib/index.d.ts", + "style": "style/index.css", "repository": { "type": "git", "url": "https://github.com/mwouts/jupyterlab-jupytext.git" }, + "workspaces": [ + "ui-tests" + ], "scripts": { - "build": "tsc", - "clean": "rimraf lib", - "prepare": "npm run clean && npm run build", - "watch": "tsc -w" + "build": "jlpm build:lib && jlpm build:labextension:dev", + "build:prod": "jlpm clean && jlpm build:lib:prod && jlpm build:labextension", + "build:labextension": "jupyter labextension build .", + "build:labextension:dev": "jupyter labextension build --development True .", + "build:lib": "tsc --sourceMap", + "build:lib:prod": "tsc", + "clean": "jlpm clean:lib", + "clean:lib": "rimraf lib tsconfig.tsbuildinfo", + "clean:lintcache": "rimraf .eslintcache .stylelintcache", + "clean:labextension": "rimraf jupyterlab_jupytext/labextension jupyterlab_jupytext/_version.py", + "clean:all": "jlpm clean:lib && jlpm clean:labextension && jlpm clean:lintcache", + "eslint": "jlpm eslint:check --fix", + "eslint:check": "eslint . --cache --ext .ts,.tsx", + "install:extension": "jlpm build", + "lint": "jlpm stylelint && jlpm prettier && jlpm eslint", + "lint:check": "jlpm stylelint:check && jlpm prettier:check && jlpm eslint:check", + "prettier": "jlpm prettier:base --write --list-different", + "prettier:base": "prettier \"**/*{.ts,.tsx,.js,.jsx,.css,.json,.md}\"", + "prettier:check": "jlpm prettier:base --check", + "stylelint": "jlpm stylelint:check --fix", + "stylelint:check": "stylelint --cache \"style/**/*.css\"", + "test": "jest --coverage", + "watch": "run-p watch:src watch:labextension", + "watch:src": "tsc -w", + "watch:labextension": "jupyter labextension watch ." }, "dependencies": { - "@jupyterlab/application": ">=0.16", - "@jupyterlab/apputils": ">=0.16", - "@jupyterlab/notebook": ">=0.16" + "@jupyterlab/application": "^4.0.1", + "@jupyterlab/apputils": "^4.1.1", + "@jupyterlab/codeeditor": "^4.0.1", + "@jupyterlab/nbformat": "^4.0.1", + "@jupyterlab/notebook": "^4.0.1", + "@jupyterlab/rendermime": "^4.0.1", + "@jupyterlab/translation": "^4.0.1", + "@jupyterlab/ui-components": "^4.0.1" }, "devDependencies": { - "rimraf": "^2.6.1", - "typescript": "~3.1.1" + "@jupyterlab/builder": "^4.0.0-beta.0", + "@jupyterlab/testutils": "^4.0.0-beta.0", + "@types/jest": "^29.2.0", + "@types/json-schema": "^7.0.11", + "@types/react": "^18.0.26", + "@typescript-eslint/eslint-plugin": "^5.55.0", + "@typescript-eslint/parser": "^5.55.0", + "css-loader": "^6.7.1", + "eslint": "^8.36.0", + "eslint-config-prettier": "^8.7.0", + "eslint-plugin-prettier": "^4.2.1", + "jest": "^29.2.0", + "npm-run-all": "^4.1.5", + "prettier": "^2.8.7", + "rimraf": "^4.4.1", + "source-map-loader": "^1.0.2", + "style-loader": "^3.3.1", + "stylelint": "^14.9.1", + "stylelint-config-prettier": "^9.0.4", + "stylelint-config-recommended": "^8.0.0", + "stylelint-config-standard": "^26.0.0", + "stylelint-prettier": "^2.0.0", + "typescript": "~5.0.2", + "yjs": "^13.5.0" + }, + "sideEffects": [ + "style/*.css", + "style/index.js" + ], + "styleModule": "style/index.js", + "publishConfig": { + "access": "public" }, "jupyterlab": { - "extension": true + "extension": true, + "outputDir": "jupyterlab_jupytext/labextension" + }, + "eslintIgnore": [ + "node_modules", + "dist", + "coverage", + "**/*.d.ts", + "tests", + "**/__tests__", + "ui-tests" + ], + "eslintConfig": { + "extends": [ + "eslint:recommended", + "plugin:@typescript-eslint/eslint-recommended", + "plugin:@typescript-eslint/recommended", + "plugin:prettier/recommended" + ], + "parser": "@typescript-eslint/parser", + "parserOptions": { + "project": "tsconfig.json", + "sourceType": "module" + }, + "plugins": [ + "@typescript-eslint" + ], + "rules": { + "@typescript-eslint/naming-convention": [ + "error", + { + "selector": "interface", + "format": [ + "PascalCase" + ], + "custom": { + "regex": "^I[A-Z]", + "match": true + } + } + ], + "@typescript-eslint/no-unused-vars": [ + "warn", + { + "args": "none" + } + ], + "@typescript-eslint/no-explicit-any": "off", + "@typescript-eslint/no-namespace": "off", + "@typescript-eslint/no-use-before-define": "off", + "@typescript-eslint/quotes": [ + "error", + "single", + { + "avoidEscape": true, + "allowTemplateLiterals": false + } + ], + "curly": [ + "error", + "all" + ], + "eqeqeq": "error", + "prefer-arrow-callback": "error" + } + }, + "prettier": { + "singleQuote": true, + "trailingComma": "none", + "arrowParens": "avoid", + "endOfLine": "auto" + }, + "stylelint": { + "extends": [ + "stylelint-config-recommended", + "stylelint-config-standard", + "stylelint-prettier/recommended" + ], + "rules": { + "property-no-vendor-prefix": null, + "selector-no-vendor-prefix": null, + "value-no-vendor-prefix": null + } } } diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 0000000..4e4bb58 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,76 @@ +[build-system] +requires = ["hatchling>=1.5.0", "jupyterlab>=4.0.0b0,<5", "hatch-nodejs-version"] +build-backend = "hatchling.build" + +[project] +name = "jupyterlab_jupytext" +readme = "README.md" +license = { file = "LICENSE" } +requires-python = ">=3.8" +classifiers = [ + "Framework :: Jupyter", + "Framework :: Jupyter :: JupyterLab", + "Framework :: Jupyter :: JupyterLab :: 4", + "Framework :: Jupyter :: JupyterLab :: Extensions", + "Framework :: Jupyter :: JupyterLab :: Extensions :: Prebuilt", + "License :: OSI Approved :: BSD License", + "Programming Language :: Python", + "Programming Language :: Python :: 3", + "Programming Language :: Python :: 3.8", + "Programming Language :: Python :: 3.9", + "Programming Language :: Python :: 3.10", + "Programming Language :: Python :: 3.11", +] +dependencies = [ +] +dynamic = ["version", "description", "authors", "urls", "keywords"] + +[tool.hatch.version] +source = "nodejs" + +[tool.hatch.metadata.hooks.nodejs] +fields = ["description", "authors", "urls"] + +[tool.hatch.build.targets.sdist] +artifacts = ["jupyterlab_jupytext/labextension"] +exclude = [".github", "binder"] + +[tool.hatch.build.targets.wheel.shared-data] +"jupyterlab_jupytext/labextension" = "share/jupyter/labextensions/jupyterlab-jupytext" +"install.json" = "share/jupyter/labextensions/jupyterlab-jupytext/install.json" + +[tool.hatch.build.hooks.version] +path = "jupyterlab_jupytext/_version.py" + +[tool.hatch.build.hooks.jupyter-builder] +dependencies = ["hatch-jupyter-builder>=0.5"] +build-function = "hatch_jupyter_builder.npm_builder" +ensured-targets = [ + "jupyterlab_jupytext/labextension/static/style.js", + "jupyterlab_jupytext/labextension/package.json", +] +skip-if-exists = ["jupyterlab_jupytext/labextension/static/style.js"] + +[tool.hatch.build.hooks.jupyter-builder.build-kwargs] +build_cmd = "build:prod" +npm = ["jlpm"] + +[tool.hatch.build.hooks.jupyter-builder.editable-build-kwargs] +build_cmd = "install:extension" +npm = ["jlpm"] +source_dir = "src" +build_dir = "jupyterlab_jupytext/labextension" + +[tool.jupyter-releaser.options] +version_cmd = "hatch version" + +[tool.jupyter-releaser.hooks] +before-build-npm = [ + "python -m pip install 'jupyterlab>=4.0.0b0,<5'", + "jlpm", + "jlpm build:prod" +] +before-build-python = ["jlpm clean:all"] + +[tool.check-wheel-contents] +ignore = ["W002"] diff --git a/setup.py b/setup.py new file mode 100644 index 0000000..bea2337 --- /dev/null +++ b/setup.py @@ -0,0 +1 @@ +__import__('setuptools').setup() diff --git a/src/__tests__/jupyterlab_jupytext.spec.ts b/src/__tests__/jupyterlab_jupytext.spec.ts new file mode 100644 index 0000000..4e8d372 --- /dev/null +++ b/src/__tests__/jupyterlab_jupytext.spec.ts @@ -0,0 +1,9 @@ +/** + * Example of [Jest](https://jestjs.io/docs/getting-started) unit tests + */ + +describe('jupyterlab-jupytext', () => { + it('should be tested', () => { + expect(1 + 1).toEqual(2); + }); +}); diff --git a/src/index.ts b/src/index.ts index 0f6347d..e30e2d2 100644 --- a/src/index.ts +++ b/src/index.ts @@ -1,123 +1,315 @@ -import { JupyterLab, JupyterLabPlugin } from "@jupyterlab/application"; +import { + JupyterFrontEnd, + JupyterFrontEndPlugin, +} from "@jupyterlab/application"; -import { ICommandPalette } from "@jupyterlab/apputils"; +import { + ICommandPalette, + ISessionContextDialogs, + showErrorMessage, +} from "@jupyterlab/apputils"; -import { INotebookTracker } from "@jupyterlab/notebook"; +import { IEditorServices } from "@jupyterlab/codeeditor"; -import { nbformat } from "@jupyterlab/coreutils"; +import * as nbformat from "@jupyterlab/nbformat"; -import "../style/index.css"; +import { + INotebookTracker, + INotebookWidgetFactory, + NotebookPanel, + NotebookWidgetFactory, +} from "@jupyterlab/notebook"; +import { IRenderMimeRegistry } from "@jupyterlab/rendermime"; + +import { + ITranslator, + nullTranslator, + TranslationBundle, +} from "@jupyterlab/translation"; + +import { markdownIcon } from "@jupyterlab/ui-components"; + +interface IJupytextFormat { + /** + * Conversion format + */ + format: string; + /** + * Command label + */ + label: string; +} + +interface JupytextRepresentation { + format_name: string; + extension: string; +} interface JupytextSection { formats?: string; + notebook_metadata_filter?: string; + cell_metadata_filter?: string; + text_representation?: JupytextRepresentation; } -const JUPYTEXT_FORMATS = [ - { - formats: "ipynb,auto:light", - label: "Pair Notebook with light Script" - }, - { - formats: "ipynb,auto:percent", - label: "Pair Notebook with percent Script" - }, - { - formats: "ipynb,auto:hydrogen", - label: "Pair Notebook with Hydrogen Script" - }, - { - formats: "ipynb,md", - label: "Pair Notebook with Markdown" - }, - { - formats: "ipynb,Rmd", - label: "Pair Notebook with R Markdown" - }, - { - formats: "custom", - label: "Custom pairing" - }, - { - formats: "none", - label: "Unpair Notebook" +function getJupytextFormats(trans: TranslationBundle): IJupytextFormat[] { + return [ + { + format: "ipynb", + label: trans.__("Pair Notebook with ipynb document"), + }, + { + format: "auto:light", + label: trans.__("Pair Notebook with light Script"), + }, + { + format: "auto:percent", + label: trans.__("Pair Notebook with percent Script"), + }, + { + format: "auto:hydrogen", + label: trans.__("Pair Notebook with Hydrogen Script"), + }, + { + format: "auto:nomarker", + label: trans.__("Pair Notebook with nomarker Script"), + }, + { + format: "md", + label: trans.__("Pair Notebook with Markdown"), + }, + { + format: "md:myst", + label: trans.__("Pair Notebook with MyST Markdown"), + }, + { + format: "Rmd", + label: trans.__("Pair Notebook with R Markdown"), + }, + { + format: "qmd", + label: trans.__("Pair Notebook with Quarto (qmd)"), + }, + { + format: "custom", + label: trans.__("Custom pairing"), + }, + { + format: "none", + label: trans.__("Unpair Notebook"), + }, + ]; +} + +/** + * Supported file formats. + */ +const LANGUAGE_INDEPENDENT_NOTEBOOK_EXTENSIONS = ["ipynb", "md", "Rmd", "qmd"]; + +function get_jupytext_formats(notebook_tracker: INotebookTracker): Array { + if (!notebook_tracker.currentWidget) return []; + + const jupytext: JupytextSection = (notebook_tracker.currentWidget.context.model.getMetadata( + "jupytext" + ) as unknown) as JupytextSection; + if ( ! jupytext ) + return []; + let formats: Array = jupytext && jupytext.formats ? jupytext.formats.split(',') : []; + return formats.filter(function (fmt) { + return fmt !== ''; + }); +} + +function get_selected_formats(notebook_tracker: INotebookTracker): Array { + if (!notebook_tracker.currentWidget) return []; + + let formats = get_jupytext_formats(notebook_tracker); + + const lang = notebook_tracker.currentWidget.context.model.getMetadata( + "language_info" + ) as nbformat.ILanguageInfoMetadata; + if (lang && lang.file_extension) { + const script_ext = lang.file_extension.substring(1); + formats = formats.map(function (fmt) { + if (fmt === script_ext) + return 'auto:light'; + return fmt.replace(script_ext + ':', 'auto:'); + }); } -]; + + let notebook_extension: string | undefined = notebook_tracker.currentWidget.context.path.split('.').pop(); + if (!notebook_extension) + return formats; + + notebook_extension = + LANGUAGE_INDEPENDENT_NOTEBOOK_EXTENSIONS.indexOf(notebook_extension) == -1 ? "auto" : notebook_extension; + for (const i in formats) { + const ext = formats[i].split(':')[0]; + if (ext == notebook_extension) + return formats; + } + + // the notebook extension was not found among the formats + if (LANGUAGE_INDEPENDENT_NOTEBOOK_EXTENSIONS.indexOf(notebook_extension) != -1) + formats.push(notebook_extension); + else { + let format_name = 'light'; + // if (notebook_tracker.currentWidget.context.model.metadata.has("jupytext")) { + const jupytext: JupytextSection = (notebook_tracker.currentWidget.context.model.getMetadata( + "jupytext" + ) as unknown) as JupytextSection; + if (jupytext && jupytext.text_representation && jupytext.text_representation.format_name) + format_name = jupytext.text_representation.format_name; + // } + formats.push('auto:' + format_name); + } + return formats; +}; /** * Initialization data for the jupyterlab-jupytext extension. */ -const extension: JupyterLabPlugin = { +const extension: JupyterFrontEndPlugin = { id: "jupyterlab-jupytext", autoStart: true, - requires: [ICommandPalette, INotebookTracker], + // IEditorTracker and IMarkdownViewerTracker are optionally requested only + // to ensure this is called after they are activated and we properly overwrite + // the default factory for non-notebook file format + optional: [ITranslator, ICommandPalette], + requires: [ + NotebookPanel.IContentFactory, + IEditorServices, + IRenderMimeRegistry, + ISessionContextDialogs, + INotebookWidgetFactory, + INotebookTracker, + ], activate: ( - app: JupyterLab, - palette: ICommandPalette, - notebook_tracker: INotebookTracker + app: JupyterFrontEnd, + contentFactory: NotebookPanel.IContentFactory, + editorServices: IEditorServices, + rendermime: IRenderMimeRegistry, + sessionContextDialogs: ISessionContextDialogs, + notebookFactory: NotebookWidgetFactory.IFactory, + notebookTracker: INotebookTracker, + translator: ITranslator | null, + palette: ICommandPalette | null ) => { console.log("JupyterLab extension jupyterlab-jupytext is activated"); + const trans = (translator ?? nullTranslator).load("jupytext"); // Jupytext formats + const JUPYTEXT_FORMATS = getJupytextFormats(trans); JUPYTEXT_FORMATS.forEach((args, rank) => { - const formats: string = args["formats"]; - const command: string = "jupytext:" + formats; + const format: string = args["format"]; + const command: string = "jupytext:" + format; app.commands.addCommand(command, { label: args["label"], isToggled: () => { - if (!notebook_tracker.currentWidget) return false; + if (!notebookTracker.currentWidget) return false; + const jupytext_formats = get_selected_formats(notebookTracker); - if ( - !notebook_tracker.currentWidget.context.model.metadata.has( - "jupytext" - ) - ) - return formats == "none"; + if (format == "custom"){ + for (const i in jupytext_formats) { + const fmt = jupytext_formats[i]; + if (['ipynb', 'auto:light', 'auto:percent', 'auto:hydrogen', 'auto:nomarker', 'md', 'Rmd', 'qmd', 'md:myst'].indexOf(fmt)==-1) + return true; + } + return false; + } + return jupytext_formats.indexOf(format)!=-1; + }, + isEnabled: () => { + if (!notebookTracker.currentWidget) + return false; - const jupytext: JupytextSection = (notebook_tracker.currentWidget.context.model.metadata.get( - "jupytext" - ) as unknown) as JupytextSection; - if (!jupytext.formats) return formats == "none"; - - const lang = notebook_tracker.currentWidget.context.model.metadata.get( - "language_info" - ) as nbformat.ILanguageInfoMetadata; - const jupytext_formats = lang - ? jupytext.formats.replace( - "," + lang.file_extension.substring(1) + ":", - ",auto:" - ) - : jupytext.formats; - - if (formats == "custom") - return ( - jupytext_formats && - [ - "ipynb,auto:light", - "ipynb,auto:percent", - "ipynb,auto:hydrogen", - "ipynb,md", - "ipynb,Rmd" - ].indexOf(jupytext_formats) < 0 - ); + const notebook_extension: string | undefined = notebookTracker.currentWidget.context.path.split('.').pop(); + if (format === notebook_extension) + return false; + + if (format === 'none') { + const formats = get_selected_formats(notebookTracker); + return formats.length > 1; + } - return jupytext_formats == formats; + return true; }, execute: () => { + if ( notebookTracker.currentWidget === null) + return; + const jupytext: JupytextSection = (notebookTracker.currentWidget.context.model.getMetadata( + "jupytext" + ) as unknown) as JupytextSection; + let formats: Array = get_selected_formats(notebookTracker); + + // Toggle the selected format console.log("Jupytext: executing command=" + command); - if (formats == "custom") { - alert( - "Please edit the notebook metadata directly if you wish a custom configuration." + if (format == "custom") { + showErrorMessage( + trans.__("Error"), + trans.__( + "Please edit the notebook metadata directly if you wish a custom configuration." + ) ); return; } + // Toggle the selected format + let notebook_extension: string = notebookTracker.currentWidget.context.path.split('.').pop() as string; + notebook_extension = LANGUAGE_INDEPENDENT_NOTEBOOK_EXTENSIONS.indexOf(notebook_extension) == -1 ? 'auto' : notebook_extension; - const jupytext: JupytextSection = (notebook_tracker.currentWidget.context.model.metadata.get( - "jupytext" - ) as unknown) as JupytextSection; + // Toggle the selected format + const index = formats.indexOf(format); + if (format === 'none') { + // Only keep one format - one that matches the current extension + for (const i in formats) { + const fmt = formats[i]; + if (fmt.split(':')[0] === notebook_extension) { + formats = [fmt]; + break; + } + } + } else if (index != -1) { + formats.splice(index, 1); + + // The current file extension can't be unpaired + let ext_found = false; + for (const i in formats) { + const fmt = formats[i]; + if (fmt.split(':')[0] === notebook_extension) { + ext_found = true; + break; + } + } + + if (!ext_found) + return; + } else { + // We can't have the same extension multiple times + const new_formats = []; + for (const i in formats) { + const fmt = formats[i]; + if (fmt.split(':')[0] !== format.split(':')[0]) { + new_formats.push(fmt) + } + } + + formats = new_formats; + formats.push(format); + } - if (formats == "none") { + if (formats.length === 1) { + if (notebook_extension !== 'auto') + formats = []; + else if (jupytext && jupytext.text_representation) { + const format_name = formats[0].split(':')[1]; + jupytext.text_representation.format_name = format_name; + formats = []; + } + } + + if (formats.length === 0) { if ( - !notebook_tracker.currentWidget.context.model.metadata.has( + !notebookTracker.currentWidget.context.model.getMetadata( "jupytext" ) ) @@ -128,37 +320,178 @@ const extension: JupyterLabPlugin = { } if (Object.keys(jupytext).length == 0) - notebook_tracker.currentWidget.context.model.metadata.delete( + notebookTracker.currentWidget.context.model.deleteMetadata( "jupytext" ); return; } - // set desired format - if (jupytext) jupytext.formats = formats; + // set the desired format + if (jupytext) jupytext.formats = formats.join(); else - notebook_tracker.currentWidget.context.model.metadata.set( + notebookTracker.currentWidget.context.model.setMetadata( "jupytext", - { formats } - ); - } + { formats: formats.join() }); + } }); - console.log("Jupytext: adding command=" + command + " with rank=" + rank); - palette.addItem({ command, rank, category: "Jupytext" }); + console.log("Jupytext: adding command=" + command + " with rank=" + (rank + 1)); + palette?.addItem({ command, rank: rank + 2, category: "Jupytext" }); }); - // Jupytext README - palette.addItem({ + // Jupytext's documentation + palette?.addItem({ args: { - text: "Jupytext Reference", + text: trans.__("Jupytext Reference"), url: "https://jupytext.readthedocs.io/en/latest/" }, command: "help:open", category: "Jupytext", - rank: JUPYTEXT_FORMATS.length + rank: 0 }); - } + + palette?.addItem({ + args: { + text: trans.__("Jupytext FAQ"), + url: "https://jupytext.readthedocs.io/en/latest/faq.html" + }, + command: "help:open", + category: "Jupytext", + rank: 1 + }); + + // Metadata in text representation + app.commands.addCommand("jupytext_metadata", { + label: trans.__("Include Metadata"), + isToggled: () => { + if (!notebookTracker.currentWidget) + return false; + + if (!notebookTracker.currentWidget.context.model.getMetadata("jupytext")) + return false; + + const jupytext: JupytextSection = (notebookTracker.currentWidget.context.model.getMetadata("jupytext") as unknown) as JupytextSection; + + if (jupytext.notebook_metadata_filter === '-all') + return false; + + return true; + }, + isEnabled: () => { + if (!notebookTracker.currentWidget) + return false; + + if (!notebookTracker.currentWidget.context.model.getMetadata("jupytext")) + return false; + + const jupytext: JupytextSection = (notebookTracker.currentWidget.context.model.getMetadata("jupytext") as unknown) as JupytextSection; + + if (jupytext.notebook_metadata_filter === undefined) + return true; + + if (jupytext.notebook_metadata_filter === '-all') + return true; + + return false; + }, + execute: () => { + console.log("Jupytext: toggling YAML header"); + if (!notebookTracker.currentWidget) + return; + + if (!notebookTracker.currentWidget.context.model.getMetadata("jupytext")) + return; + + const jupytext: JupytextSection = (notebookTracker.currentWidget.context.model.getMetadata("jupytext") as unknown) as JupytextSection; + + if (jupytext.notebook_metadata_filter) { + delete jupytext.notebook_metadata_filter; + if (jupytext.cell_metadata_filter === '-all') + delete jupytext.cell_metadata_filter; + return + } + + jupytext.notebook_metadata_filter = '-all' + if (jupytext.cell_metadata_filter === undefined) + jupytext.cell_metadata_filter = '-all'; + } + }); + + palette?.addItem({ + command: "jupytext_metadata", + rank: JUPYTEXT_FORMATS.length + 3, + category: "Jupytext", + }); + + // Define file types + app.docRegistry.addFileType({ + name: "myst", + displayName: trans.__("MyST Markdown Notebook"), + extensions: [".myst", ".mystnb", ".mnb"], + icon: markdownIcon + }); + + app.docRegistry.addFileType({ + name: "r-markdown", + displayName: trans.__("R Markdown Notebook"), + // Extension file are transformed to lower case... + extensions: [".rmd"], + icon: markdownIcon + }); + + app.docRegistry.addFileType({ + name: "quarto", + displayName: trans.__("Quarto Notebook"), + extensions: [".qmd"], + icon: markdownIcon + }); + + // Duplicate notebook factory to apply it on Jupytext notebooks + // Mirror: https://github.com/jupyterlab/jupyterlab/blob/8a8c3752564f37493d4eb6b4c59008027fa83880/packages/notebook-extension/src/index.ts#L860 + const factory = new NotebookWidgetFactory({ + name: "Jupytext Notebook", + label: trans.__("Jupytext Notebook"), + fileTypes: ["markdown", "myst", "r-markdown", "quarto", "julia", "python", "r"], + modelName: notebookFactory.modelName ?? "notebook", + preferKernel: notebookFactory.preferKernel ?? true, + canStartKernel: notebookFactory.canStartKernel ?? true, + rendermime, + contentFactory, + editorConfig: notebookFactory.editorConfig, + notebookConfig: notebookFactory.notebookConfig, + mimeTypeService: editorServices.mimeTypeService, + // sessionDialogs: sessionContextDialogs, + toolbarFactory: notebookFactory.toolbarFactory, + // translator?: ITranslator, + }); + app.docRegistry.addWidgetFactory(factory); + + // Register widget created with the new factory in the notebook tracker + // This is required to activate notebook commands (and therefore shortcuts) + let id = 0; // The ID counter for notebook panels. + const ft = app.docRegistry.getFileType("notebook"); + + factory.widgetCreated.connect((sender, widget) => { + // If the notebook panel does not have an ID, assign it one. + widget.id = widget.id || `notebook-jupytext-${++id}`; + + // Set up the title icon + widget.title.icon = ft?.icon; + widget.title.iconClass = ft?.iconClass ?? ""; + widget.title.iconLabel = ft?.iconLabel ?? ""; + + // Notify the widget tracker if restore data needs to update. + widget.context.pathChanged.connect(() => { + // Trick using private API + // @ts-ignore + void notebookTracker.save(widget); + }); + // Add the notebook panel to the tracker. + // Trick using private API + // @ts-ignore + void notebookTracker.add(widget); + }); + }, }; export default extension; diff --git a/style/base.css b/style/base.css new file mode 100644 index 0000000..e11f457 --- /dev/null +++ b/style/base.css @@ -0,0 +1,5 @@ +/* + See the JupyterLab Developer Guide for useful CSS Patterns: + + https://jupyterlab.readthedocs.io/en/stable/developer/css.html +*/ diff --git a/style/index.css b/style/index.css index e69de29..e98119b 100644 --- a/style/index.css +++ b/style/index.css @@ -0,0 +1 @@ +@import 'base.css'; diff --git a/style/index.js b/style/index.js new file mode 100644 index 0000000..a028a76 --- /dev/null +++ b/style/index.js @@ -0,0 +1 @@ +import './base.css'; diff --git a/tsconfig.json b/tsconfig.json index 4946663..4f3547d 100644 --- a/tsconfig.json +++ b/tsconfig.json @@ -1,17 +1,24 @@ { "compilerOptions": { + "allowSyntheticDefaultImports": true, + "composite": true, "declaration": true, - "lib": ["es2015", "dom"], - "module": "commonjs", + "esModuleInterop": true, + "incremental": true, + "jsx": "react", + "module": "esnext", "moduleResolution": "node", "noEmitOnError": true, + "noImplicitAny": true, "noUnusedLocals": true, + "preserveWatchOutput": true, + "resolveJsonModule": true, "outDir": "lib", "rootDir": "src", "strict": true, - "strictNullChecks": false, - "target": "es2015", - "types": [] + "strictNullChecks": true, + "target": "ES2018", + "types": ["jest"] }, "include": ["src/*"] } diff --git a/tsconfig.test.json b/tsconfig.test.json new file mode 100644 index 0000000..1c66acf --- /dev/null +++ b/tsconfig.test.json @@ -0,0 +1,3 @@ +{ + "extends": "./tsconfig" +} diff --git a/ui-tests/README.md b/ui-tests/README.md new file mode 100644 index 0000000..dbe6e8a --- /dev/null +++ b/ui-tests/README.md @@ -0,0 +1,167 @@ +# Integration Testing + +This folder contains the integration tests of the extension. + +They are defined using [Playwright](https://playwright.dev/docs/intro) test runner +and [Galata](https://github.com/jupyterlab/jupyterlab/tree/master/galata) helper. + +The Playwright configuration is defined in [playwright.config.js](./playwright.config.js). + +The JupyterLab server configuration to use for the integration test is defined +in [jupyter_server_test_config.py](./jupyter_server_test_config.py). + +The default configuration will produce video for failing tests and an HTML report. + +> There is a new experimental UI mode that you may fall in love with; see [that video](https://www.youtube.com/watch?v=jF0yA-JLQW0). + +## Run the tests + +> All commands are assumed to be executed from the root directory + +To run the tests, you need to: + +1. Compile the extension: + +```sh +jlpm install +jlpm build:prod +``` + +> Check the extension is installed in JupyterLab. + +2. Install test dependencies (needed only once): + +```sh +cd ./ui-tests +jlpm install +jlpm playwright install +cd .. +``` + +3. Execute the [Playwright](https://playwright.dev/docs/intro) tests: + +```sh +cd ./ui-tests +jlpm playwright test +``` + +Test results will be shown in the terminal. In case of any test failures, the test report +will be opened in your browser at the end of the tests execution; see +[Playwright documentation](https://playwright.dev/docs/test-reporters#html-reporter) +for configuring that behavior. + +## Update the tests snapshots + +> All commands are assumed to be executed from the root directory + +If you are comparing snapshots to validate your tests, you may need to update +the reference snapshots stored in the repository. To do that, you need to: + +1. Compile the extension: + +```sh +jlpm install +jlpm build:prod +``` + +> Check the extension is installed in JupyterLab. + +2. Install test dependencies (needed only once): + +```sh +cd ./ui-tests +jlpm install +jlpm playwright install +cd .. +``` + +3. Execute the [Playwright](https://playwright.dev/docs/intro) command: + +```sh +cd ./ui-tests +jlpm playwright test -u +``` + +> Some discrepancy may occurs between the snapshots generated on your computer and +> the one generated on the CI. To ease updating the snapshots on a PR, you can +> type `please update playwright snapshots` to trigger the update by a bot on the CI. +> Once the bot has computed new snapshots, it will commit them to the PR branch. + +## Create tests + +> All commands are assumed to be executed from the root directory + +To create tests, the easiest way is to use the code generator tool of playwright: + +1. Compile the extension: + +```sh +jlpm install +jlpm build:prod +``` + +> Check the extension is installed in JupyterLab. + +2. Install test dependencies (needed only once): + +```sh +cd ./ui-tests +jlpm install +jlpm playwright install +cd .. +``` + +3. Start the server: + +```sh +cd ./ui-tests +jlpm start +``` + +4. Execute the [Playwright code generator](https://playwright.dev/docs/codegen) in **another terminal**: + +```sh +cd ./ui-tests +jlpm playwright codegen localhost:8888 +``` + +## Debug tests + +> All commands are assumed to be executed from the root directory + +To debug tests, a good way is to use the inspector tool of playwright: + +1. Compile the extension: + +```sh +jlpm install +jlpm build:prod +``` + +> Check the extension is installed in JupyterLab. + +2. Install test dependencies (needed only once): + +```sh +cd ./ui-tests +jlpm install +jlpm playwright install +cd .. +``` + +3. Execute the Playwright tests in [debug mode](https://playwright.dev/docs/debug): + +```sh +cd ./ui-tests +jlpm playwright test --debug +``` + +## Upgrade Playwright and the browsers + +To update the web browser versions, you must update the package `@playwright/test`: + +```sh +cd ./ui-tests +jlpm up "@playwright/test" +jlpm playwright install +``` diff --git a/ui-tests/jupyter_server_test_config.py b/ui-tests/jupyter_server_test_config.py new file mode 100644 index 0000000..f2a9478 --- /dev/null +++ b/ui-tests/jupyter_server_test_config.py @@ -0,0 +1,12 @@ +"""Server configuration for integration tests. + +!! Never use this configuration in production because it +opens the server to the world and provide access to JupyterLab +JavaScript objects through the global window variable. +""" +from jupyterlab.galata import configure_jupyter_server + +configure_jupyter_server(c) + +# Uncomment to set server log level to debug level +# c.ServerApp.log_level = "DEBUG" diff --git a/ui-tests/package.json b/ui-tests/package.json new file mode 100644 index 0000000..7159425 --- /dev/null +++ b/ui-tests/package.json @@ -0,0 +1,15 @@ +{ + "name": "jupyterlab-jupytext-ui-tests", + "version": "1.0.0", + "description": "JupyterLab jupyterlab-jupytext Integration Tests", + "private": true, + "scripts": { + "start": "jupyter lab --config jupyter_server_test_config.py", + "test": "jlpm playwright test", + "test:update": "jlpm playwright test --update-snapshots" + }, + "devDependencies": { + "@jupyterlab/galata": "^5.0.0-beta.0", + "@playwright/test": "^1.32.0" + } +} diff --git a/ui-tests/playwright.config.js b/ui-tests/playwright.config.js new file mode 100644 index 0000000..9ece6fa --- /dev/null +++ b/ui-tests/playwright.config.js @@ -0,0 +1,14 @@ +/** + * Configuration for Playwright using default from @jupyterlab/galata + */ +const baseConfig = require('@jupyterlab/galata/lib/playwright-config'); + +module.exports = { + ...baseConfig, + webServer: { + command: 'jlpm start', + url: 'http://localhost:8888/lab', + timeout: 120 * 1000, + reuseExistingServer: !process.env.CI + } +}; diff --git a/ui-tests/tests/jupyterlab_jupytext.spec.ts b/ui-tests/tests/jupyterlab_jupytext.spec.ts new file mode 100644 index 0000000..f4e9f13 --- /dev/null +++ b/ui-tests/tests/jupyterlab_jupytext.spec.ts @@ -0,0 +1,21 @@ +import { expect, test } from '@jupyterlab/galata'; + +/** + * Don't load JupyterLab webpage before running the tests. + * This is required to ensure we capture all log messages. + */ +test.use({ autoGoto: false }); + +test('should emit an activation console message', async ({ page }) => { + const logs: string[] = []; + + page.on('console', message => { + logs.push(message.text()); + }); + + await page.goto(); + + expect( + logs.filter(s => s === 'JupyterLab extension jupyterlab-jupytext is activated!') + ).toHaveLength(1); +}); diff --git a/ui-tests/yarn.lock b/ui-tests/yarn.lock new file mode 100644 index 0000000..e69de29 diff --git a/yarn.lock b/yarn.lock new file mode 100644 index 0000000..9b869f3 --- /dev/null +++ b/yarn.lock @@ -0,0 +1,12021 @@ +# This file is generated by running "yarn install" inside your project. +# Manual changes might be lost - proceed with caution! + +__metadata: + version: 6 + cacheKey: 8 + +"@ampproject/remapping@npm:^2.2.0": + version: 2.2.1 + resolution: "@ampproject/remapping@npm:2.2.1" + dependencies: + "@jridgewell/gen-mapping": ^0.3.0 + "@jridgewell/trace-mapping": ^0.3.9 + checksum: 03c04fd526acc64a1f4df22651186f3e5ef0a9d6d6530ce4482ec9841269cf7a11dbb8af79237c282d721c5312024ff17529cd72cc4768c11e999b58e2302079 + languageName: node + 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