Ensure user submodule is properly linked #100
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PR description
This PR ensures that the setup script always checks the presence of the user submodule. If it's found it is properly linked, if it's not present the default template is copied over.
As out-of-source builds are strongly recommended anyway there is actually no reason why someone should use the default user module from the source directory, so that option has been removed.
Bugfixes
Legolas