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Fix #1164, use FS file name parser for commands
For commands containing file names, replace the call to CFE_SB_MessageStringGet() - which is just a basic copy - to the new filename-aware function CFE_FS_ParseInputFileName(). This means that the default pathname/extension logic is applied here too and only a "basename" is strictly necessary, although if a full/absolute path is given, it will be used as is.
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