_pkgdown.yml

reference:
- title: Package Help
  desc: Provides an overview of key functions and classes
  contents: flycircuit
- title: Identifiers and Annotations
  desc: |
    There are at least 3 different kinds of identifiers in use with the 
    flycircuit database. These functions convert between them as well as making 
    additional metadata available. Furthermore annotations carried out in the 
    course of the Costa et al. NBLAST study are also available - these include 
    the identification of 5400 neuronal types as well as the glomeruli 
    innervated by 433 olfactory projection neurons.
  contents:
  - annotation
  - fc_glom
  - fc_neuron_type
  - fc_sex
  - fcidtable
  - fc_gene_name
  - fcgn_forfile
  - fc_get_ids
- title: Read neuron skeletons / web data
  desc: |
    See the package README for other data download options.
  contents:
  - fc_read_neurons
  - fc_page
- title: Clustering and searching
  contents:
  - apclusterfc
  - as.data.frame.APResult
  - fc_nblast
  - hclustfc
  - fc_subscoremat
  - kcs20scores
- title: Plotting and surfaces
  contents:
  - FCWB.surf
  - FCWBNP.surf
  - fcwbnpsurf
  - fcwbsurf
  - getRegionsFromSurf
  - getRegionSurf
  - plot3d.APResult
  - plot3dfc
  - pop3dfc
  - selectRegionsFromSurf
  - dpscan
  - drawRegionSurf
- title: Support for remote / optional data
  desc: |
    Some flycircuit functionality depends on data which is not bundled into the 
    R package (since it is about 4GB in size). These functions handle download 
    and access to such data.
  contents:
  - download.file.wcheck
  - fc_attach_bigmat
  - fc_attach_ff
  - fc_download_data
  - load_fcdata
  - load_fcdb
  - load_si_data
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      href: reference/index.html
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      text: Help
      href: SUPPORT.html