- fix h5 registrations on MacOS ARM machines (#10)
- set up github actions (check, coverage, pkgdown)
- try to provide more information about java errors in
saalfeld_xform()
dr_h5reg()
to check java and h5reg installation- substantial speed-up in transforming
neuronlist
objects withxformpoints.h5reg()
by memoising the default level check for h5reg objects (17148d5219ff1b1b99ab1dfb4f793eede175cf39).
- Faster transforms by using rJava when available (#6)
- Don't warn when using a default registration level (#8)
- fix saalfeld_xform fails with NA points in inputs (#7)
- add package overview documentation
- switch to natverse github organisation
- Make hdf5r package an essential dependency (i.e. Import) because we need to look inside h5 files to run the transforms (#5)
- quote all paths to java command line tool (in case e.g. path to transform file has a space in it) (#4)
- update to v0.0.1 release of java command line tool. This changes the behaviour of out of range points to affine + nearest non-rigid displacement (see saalfeldlab/transform-helpers#3)
- depend on R >= 3.5.0 for rds test files
- fix a bug in inverse transforms by upgrading transform helper jar file
- export
is.h5reg()
andread.h5reg.info()
- add some tests and simple test h5 files
- First public version
- Fully functional transforms using sample h5 format transforms from Stephan Saalfeld.