diff --git a/dev/.buildinfo b/dev/.buildinfo index 097d478b0..15b243656 100644 --- a/dev/.buildinfo +++ b/dev/.buildinfo @@ -1,4 +1,4 @@ # Sphinx build info version 1 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. -config: 9a4b54173c02119141b2a2150349a21b +config: 6f8409b759352800113ce64fec86a9f7 tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip b/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip index 5c94becea..344f50b80 100644 Binary files a/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip and b/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip differ diff --git a/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip b/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip index b5a723de7..451eca366 100644 Binary files a/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip and b/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip differ diff --git a/dev/_images/sphx_glr_plot_extended_isolation_forest_006.png 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a/dev/_images/sphx_glr_treeple_tutorial_2_2_pvalue_multiview_003.png and b/dev/_images/sphx_glr_treeple_tutorial_2_2_pvalue_multiview_003.png differ diff --git a/dev/_images/sphx_glr_treeple_tutorial_2_2_pvalue_multiview_thumb.png b/dev/_images/sphx_glr_treeple_tutorial_2_2_pvalue_multiview_thumb.png index 5c34ceb99..470d8973d 100644 Binary files a/dev/_images/sphx_glr_treeple_tutorial_2_2_pvalue_multiview_thumb.png and b/dev/_images/sphx_glr_treeple_tutorial_2_2_pvalue_multiview_thumb.png differ diff --git a/dev/_modules/index.html b/dev/_modules/index.html index 80548f03c..3379b2631 100644 --- a/dev/_modules/index.html +++ b/dev/_modules/index.html @@ -490,7 +490,7 @@

All modules for which code is available

- © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-11. + © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-15.

diff --git a/dev/_modules/treeple/_lib/sklearn/ensemble/_forest.html b/dev/_modules/treeple/_lib/sklearn/ensemble/_forest.html index b7adb1652..2af8a9400 100644 --- a/dev/_modules/treeple/_lib/sklearn/ensemble/_forest.html +++ b/dev/_modules/treeple/_lib/sklearn/ensemble/_forest.html @@ -4122,7 +4122,7 @@

Source code for treeple._lib.sklearn.ensemble._forest

- © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-11. + © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-15.

diff --git a/dev/_modules/treeple/_lib/sklearn/tree/_classes.html b/dev/_modules/treeple/_lib/sklearn/tree/_classes.html index 625e31ff3..ba4caeead 100644 --- a/dev/_modules/treeple/_lib/sklearn/tree/_classes.html +++ b/dev/_modules/treeple/_lib/sklearn/tree/_classes.html @@ -2967,7 +2967,7 @@

Source code for treeple._lib.sklearn.tree._classes

- © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-11. + © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-15.

diff --git a/dev/_modules/treeple/datasets/hyppo.html b/dev/_modules/treeple/datasets/hyppo.html index 121f65417..f520d5af9 100644 --- a/dev/_modules/treeple/datasets/hyppo.html +++ b/dev/_modules/treeple/datasets/hyppo.html @@ -1374,7 +1374,7 @@

Source code for treeple.datasets.hyppo

         

   

     
-      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-11.
+      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-15.
       

     
   

diff --git a/dev/_modules/treeple/datasets/multiview.html b/dev/_modules/treeple/datasets/multiview.html
index 06bf76bac..ef7454c98 100644
--- a/dev/_modules/treeple/datasets/multiview.html
+++ b/dev/_modules/treeple/datasets/multiview.html
@@ -836,7 +836,7 @@ 
Source code for treeple.datasets.multiview
         

   

     
-      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-11.
+      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-15.
       

     
   

diff --git a/dev/_modules/treeple/ensemble/_eiforest.html b/dev/_modules/treeple/ensemble/_eiforest.html
index df7866c0a..30dee26f6 100644
--- a/dev/_modules/treeple/ensemble/_eiforest.html
+++ b/dev/_modules/treeple/ensemble/_eiforest.html
@@ -673,7 +673,7 @@ 
Source code for treeple.ensemble._eiforest
         

   

     
-      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-11.
+      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-15.
       

     
   

diff --git a/dev/_modules/treeple/ensemble/_honest_forest.html b/dev/_modules/treeple/ensemble/_honest_forest.html
index ff8e4afac..85bfb8bbe 100644
--- a/dev/_modules/treeple/ensemble/_honest_forest.html
+++ b/dev/_modules/treeple/ensemble/_honest_forest.html
@@ -697,7 +697,7 @@ 
Source code for treeple.ensemble._honest_forest
<
         - If int, then draw `max_samples` samples.
         - If float, then draw `max_samples * X.shape[0]` samples.
 
-    honest_prior : {"ignore", "uniform", "empirical"}, default="empirical"
+    honest_prior : {"ignore", "uniform", "empirical"}, default="ignore"
         Method for dealing with empty leaves during evaluation of a test
         sample. If "ignore", the tree is ignored. If "uniform", the prior tree
         posterior is 1/(number of classes). If "empirical", the prior tree
@@ -882,7 +882,7 @@ 
Source code for treeple.ensemble._honest_forest
<
         class_weight=None,
         ccp_alpha=0.0,
         max_samples=None,
-        honest_prior="empirical",
+        honest_prior="ignore",
         honest_fraction=0.5,
         tree_estimator=None,
         stratify=False,
@@ -1092,7 +1092,7 @@ 
Source code for treeple.ensemble._honest_forest
<
         return self._predict_proba(X)

 
 
-    def _predict_proba(self, X, indices=None, impute_missing=None):
+    def _predict_proba(self, X, indices=None, impute_missing=np.nan):
         """predict_proba helper class"""
         check_is_fitted(self)
         X = self._validate_X_predict(X)
@@ -1116,10 +1116,7 @@ 
Source code for treeple.ensemble._honest_forest
<
         zero_mask = posteriors.sum(2) == 0
         posteriors[~zero_mask] /= posteriors[~zero_mask].sum(1, keepdims=True)
 
-        if impute_missing is None:
-            pass
-        else:
-            posteriors[zero_mask] = impute_missing
+        posteriors[zero_mask] = impute_missing
 
         # preserve shape of multi-outputs
         if self.n_outputs_ > 1:
@@ -1277,10 +1274,10 @@ 
Source code for treeple.ensemble._honest_forest
<
 
     with lock:
         if len(out) == 1:
-            out[0][indices] += proba
+            out[0][indices] = np.nansum([out[0][indices], proba], axis=0)
         else:
             for i in range(len(out)):
-                out[i][indices] += proba[i]
+                out[i][indices] = np.nansum([out[i][indices], proba[i]], axis=0)
 

 
                 
@@ -1321,7 +1318,7 @@ 
Source code for treeple.ensemble._honest_forest
<
         

   

     
-      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-11.
+      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-15.
       

     
   

diff --git a/dev/_modules/treeple/ensemble/_multiview.html b/dev/_modules/treeple/ensemble/_multiview.html
index fac7b1096..12213acf5 100644
--- a/dev/_modules/treeple/ensemble/_multiview.html
+++ b/dev/_modules/treeple/ensemble/_multiview.html
@@ -792,7 +792,7 @@ 
Source code for treeple.ensemble._multiview
         

   

     
-      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-11.
+      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-15.
       

     
   

diff --git a/dev/_modules/treeple/ensemble/_supervised_forest.html b/dev/_modules/treeple/ensemble/_supervised_forest.html
index 3be116bc3..6675a3d97 100644
--- a/dev/_modules/treeple/ensemble/_supervised_forest.html
+++ b/dev/_modules/treeple/ensemble/_supervised_forest.html
@@ -2417,7 +2417,7 @@ 
Source code for treeple.ensemble._supervised_forest

   

     
-      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-11.
+      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-15.
       

     
   

diff --git a/dev/_modules/treeple/ensemble/_unsupervised_forest.html b/dev/_modules/treeple/ensemble/_unsupervised_forest.html
index f7f190119..c3d79c65b 100644
--- a/dev/_modules/treeple/ensemble/_unsupervised_forest.html
+++ b/dev/_modules/treeple/ensemble/_unsupervised_forest.html
@@ -1308,7 +1308,7 @@ 
Source code for treeple.ensemble._unsupervised_forest

   

     
-      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-11.
+      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-15.
       

     
   

diff --git a/dev/_modules/treeple/experimental/monte_carlo.html b/dev/_modules/treeple/experimental/monte_carlo.html
index 8f10b94e8..bb0b890b1 100644
--- a/dev/_modules/treeple/experimental/monte_carlo.html
+++ b/dev/_modules/treeple/experimental/monte_carlo.html
@@ -696,7 +696,7 @@ 
Source code for treeple.experimental.monte_carlo

         

   

     
-      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-11.
+      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-15.
       

     
   

diff --git a/dev/_modules/treeple/experimental/mutual_info.html b/dev/_modules/treeple/experimental/mutual_info.html
index fcc6d623f..915c36121 100644
--- a/dev/_modules/treeple/experimental/mutual_info.html
+++ b/dev/_modules/treeple/experimental/mutual_info.html
@@ -933,7 +933,7 @@ 
Source code for treeple.experimental.mutual_info

         

   

     
-      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-11.
+      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-15.
       

     
   

diff --git a/dev/_modules/treeple/experimental/simulate.html b/dev/_modules/treeple/experimental/simulate.html
index 7de6507aa..05db00123 100644
--- a/dev/_modules/treeple/experimental/simulate.html
+++ b/dev/_modules/treeple/experimental/simulate.html
@@ -706,7 +706,7 @@ 
Source code for treeple.experimental.simulate

   

     
-      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-11.
+      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-15.
       

     
   

diff --git a/dev/_modules/treeple/neighbors.html b/dev/_modules/treeple/neighbors.html
index 8826c7c15..559e25bcd 100644
--- a/dev/_modules/treeple/neighbors.html
+++ b/dev/_modules/treeple/neighbors.html
@@ -693,7 +693,7 @@ 
Source code for treeple.neighbors
         

   

     
-      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-11.
+      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-15.
       

     
   

diff --git a/dev/_modules/treeple/stats/forestht.html b/dev/_modules/treeple/stats/forestht.html
index a9243dd05..e77ad11d5 100644
--- a/dev/_modules/treeple/stats/forestht.html
+++ b/dev/_modules/treeple/stats/forestht.html
@@ -964,7 +964,7 @@ 
Source code for treeple.stats.forestht
         

   

     
-      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-11.
+      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-15.
       

     
   

diff --git a/dev/_modules/treeple/stats/permuteforest.html b/dev/_modules/treeple/stats/permuteforest.html
index 298079fe7..ff6520579 100644
--- a/dev/_modules/treeple/stats/permuteforest.html
+++ b/dev/_modules/treeple/stats/permuteforest.html
@@ -957,7 +957,7 @@ 
Source code for treeple.stats.permuteforest
         

   

     
-      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-11.
+      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-15.
       

     
   

diff --git a/dev/_modules/treeple/tree/_classes.html b/dev/_modules/treeple/tree/_classes.html
index 5786a439e..84832e52e 100644
--- a/dev/_modules/treeple/tree/_classes.html
+++ b/dev/_modules/treeple/tree/_classes.html
@@ -3737,7 +3737,7 @@ 
Source code for treeple.tree._classes
         

   

     
-      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-11.
+      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-15.
       

     
   

diff --git a/dev/_modules/treeple/tree/_honest_tree.html b/dev/_modules/treeple/tree/_honest_tree.html
index 169487100..2b2ad03ed 100644
--- a/dev/_modules/treeple/tree/_honest_tree.html
+++ b/dev/_modules/treeple/tree/_honest_tree.html
@@ -1311,7 +1311,7 @@ 
Source code for treeple.tree._honest_tree
         

   

     
-      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-11.
+      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-15.
       

     
   

diff --git a/dev/_modules/treeple/tree/_multiview.html b/dev/_modules/treeple/tree/_multiview.html
index 8c99b1ecd..591d707ec 100644
--- a/dev/_modules/treeple/tree/_multiview.html
+++ b/dev/_modules/treeple/tree/_multiview.html
@@ -1149,7 +1149,7 @@ 
Source code for treeple.tree._multiview
         

   

     
-      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-11.
+      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-15.
       

     
   

diff --git a/dev/_modules/treeple/tree/_neighbors.html b/dev/_modules/treeple/tree/_neighbors.html
index e40cd1ac8..29c4c4a14 100644
--- a/dev/_modules/treeple/tree/_neighbors.html
+++ b/dev/_modules/treeple/tree/_neighbors.html
@@ -547,7 +547,7 @@ 
Source code for treeple.tree._neighbors
         

   

     
-      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-11.
+      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-15.
       

     
   

diff --git a/dev/api.html b/dev/api.html
index 8152c4970..dee11985c 100644
--- a/dev/api.html
+++ b/dev/api.html
@@ -881,7 +881,7 @@ 
Experimental Functionality
   

     
-      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-11.
+      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-15.
       

     
   

diff --git a/dev/auto_examples/calibration/index.html b/dev/auto_examples/calibration/index.html
index 6d18a4c49..81bb02e54 100644
--- a/dev/auto_examples/calibration/index.html
+++ b/dev/auto_examples/calibration/index.html
@@ -562,7 +562,7 @@
         

   

     
-      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-11.
+      © Copyright 2022-2024, treeple Developers. Last updated on 2024-07-15.
       

     
   

diff --git a/dev/auto_examples/calibration/plot_overlapping_gaussians.html b/dev/auto_examples/calibration/plot_overlapping_gaussians.html
index 8b77d0e18..6ec460a2c 100644
--- a/dev/auto_examples/calibration/plot_overlapping_gaussians.html
+++ b/dev/auto_examples/calibration/plot_overlapping_gaussians.html
@@ -690,8 +690,8 @@ 
References# curve, compared to RF which is shown below.
 

 

-plot overlapping gaussians
Total running time of the script: (0 minutes 6.897 seconds)

-
Estimated memory usage:  56 MB

+plot overlapping gaussians
Total running time of the script: (0 minutes 7.533 seconds)

+
Estimated memory usage:  59 MB