scripts

Sharing and versioning processing scripts of studies

Introduction

This repository aims to share scripts for Neuroimaging and Genetic data analysis.

for studies: version and share scripts to process individidual ( imaging and genetic ) data as well as scripts for group-wise statistical/machine learning analysis.

Remarks

• Scripts are not intend to work or compile for other. Just provide softwares/libraries dependances.
• Keep it lightweight: avoid binary files such as pdf, doc, etc.

Global organization

for each study create a directory such:

YYYY_study/ doc/ scripts/

Example:

  2012_ABIDE/     # Study name prefixed by the year
    scripts/   
      01_unpack_and_organize_data.sh
        readme.[rst|txt]
        01_segmentation_with_spm.m
        02_segmentation_with_fsl.sh
        03_quality-control_spm-vs-fsl.py
        04_quality-control_plot_tissue-proportion-per-site.R
        ...
  doc/