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GATK is slow AF, investigate alternatives to speed things up #211

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matthdsm opened this issue Oct 17, 2024 · 1 comment
Open

GATK is slow AF, investigate alternatives to speed things up #211

matthdsm opened this issue Oct 17, 2024 · 1 comment
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enhancement New feature or request low-priority Low priority issues (Don't focus on these for the next release)

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@matthdsm
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Description of feature

benchmark freebayes and elprep for speed and accuracy

https://github.com/freebayes/freebayes
https://github.com/ExaScience/elprep
@matthdsm matthdsm added the enhancement New feature or request label Oct 17, 2024
@nvnieuwk
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Elprep has been added to the pipeline, but is currently not maintained by the original developers. Might come back to this issue later

@nvnieuwk nvnieuwk added the low-priority Low priority issues (Don't focus on these for the next release) label Nov 26, 2024
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@matthdsm @nvnieuwk