Skip to content

Commit

Permalink
Run prettier -w.
Browse files Browse the repository at this point in the history
  • Loading branch information
@jianhong
jianhong committed Jul 18, 2023
1 parent c416194 commit 59391ab
Showing 1 changed file with 9 additions and 9 deletions.
18 changes: 9 additions & 9 deletions docs/usage.md
View file
Original file line number Diff line number Diff line change
Expand Up @@ -52,15 +52,15 @@ TREATMENT,3,AEG588A6_S6_L003_R1_001.fastq.gz,AEG588A6_S6_L003_R2_001.fastq.gz,,
TREATMENT,3,AEG588A6_S6_L004_R1_001.fastq.gz,AEG588A6_S6_L004_R2_001.fastq.gz,,
```

| Column | Description |
| --------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| `group` | Custom group name. This entry will be identical for multiple sequencing libraries/runs from the same sample. Spaces in sample names are automatically converted to underscores (`_`). |
| `replicate` | Biological replicates of the samples. |
| `techniquereplicate` | technique replicates of the samples. Default is 1. |
| `fastq_1` | Full path to FastQ file for Illumina short reads 1. File has to be gzipped and have the extension ".fastq.gz" or ".fq.gz". |
| `fastq_2` | Full path to FastQ file for Illumina short reads 2. File has to be gzipped and have the extension ".fastq.gz" or ".fq.gz". |
| `md5_1` | Checksum for fastq_1. The checksums of the files will be check to make sure the file is not truncated if provided. |
| `md5_2` | Checksum for fastq_2. The checksums of the files will be check to make sure the file is not truncated if provided. |
| Column | Description |
| -------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| `group` | Custom group name. This entry will be identical for multiple sequencing libraries/runs from the same sample. Spaces in sample names are automatically converted to underscores (`_`). |
| `replicate` | Biological replicates of the samples. |
| `techniquereplicate` | technique replicates of the samples. Default is 1. |
| `fastq_1` | Full path to FastQ file for Illumina short reads 1. File has to be gzipped and have the extension ".fastq.gz" or ".fq.gz". |
| `fastq_2` | Full path to FastQ file for Illumina short reads 2. File has to be gzipped and have the extension ".fastq.gz" or ".fq.gz". |
| `md5_1` | Checksum for fastq_1. The checksums of the files will be check to make sure the file is not truncated if provided. |
| `md5_2` | Checksum for fastq_2. The checksums of the files will be check to make sure the file is not truncated if provided. |

An [example samplesheet](../assets/samplesheet.csv) has been provided with the pipeline.

Expand Down

0 comments on commit 59391ab

Please sign in to comment.