From 0a17722d8979095ec67d17f972b28cf9b491707e Mon Sep 17 00:00:00 2001 From: Luisa Santus Date: Mon, 16 Sep 2024 08:57:34 +0000 Subject: [PATCH] Update metromap --- CHANGELOG.md | 1 + docs/usage.md | 2 ++ nextflow_schema.json | 2 +- 3 files changed, 4 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index c5d38d55..45f016b4 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -33,6 +33,7 @@ Initial release of nf-core/multiplesequencealign, created with the [nf-core](htt - [[#84](https://github.com/nf-core/multiplesequencealign/issues/84)] - Update Metromap. - [[#139](https://github.com/nf-core/multiplesequencealign/pull/139)] - Add Foldmason. - [[#146](https://github.com/nf-core/multiplesequencealign/pull/146)] - Only show additional process tags when they exists and use the same ubuntu version in all modules. +- [[#145](https://github.com/nf-core/multiplesequencealign/pull/145)] - Add consensus MSA. ### `Fixed` diff --git a/docs/usage.md b/docs/usage.md index 501459b4..323b99c0 100644 --- a/docs/usage.md +++ b/docs/usage.md @@ -60,6 +60,8 @@ The available ALIGN methods are listed below (those that accept guide trees are - [MTMALIGN](https://bio.tools/mtm-align) - [FOLDMASON](https://github.com/steineggerlab/foldmason) +Optionally, [M-COFFEE](https://tcoffee.org/Projects/mcoffee/index.html) will combine the output of all alignments into a consensus MSA (--build_consensus). + ### 4. EVALUATE Optionally, the produced MSAs can be evaluated. This step can be skipped using the `--skip_eval` parameter. The evaluations implemented are listed below. diff --git a/nextflow_schema.json b/nextflow_schema.json index bc429667..b9747e9a 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -64,7 +64,7 @@ "title": "Stats options", "type": "object", "fa_icon": "fas fa-terminal", - "description": "Define wether to run stats.", + "description": "Define extra alignment options.", "properties": { "build_consensus": { "type": "boolean",