From cd0b46c50714170199ba487b1ca9be3e0e09de9b Mon Sep 17 00:00:00 2001
From: Adam Bennett <adbennett@minderoo.org>
Date: Fri, 12 Apr 2024 09:30:31 +0800
Subject: [PATCH] added pattern to ncbidownload_group's input validation to
 allow a comma separated list of groups

---
 nextflow_schema.json | 14 +-------------
 1 file changed, 1 insertion(+), 13 deletions(-)

diff --git a/nextflow_schema.json b/nextflow_schema.json
index 03f9fa8..b49f205 100644
--- a/nextflow_schema.json
+++ b/nextflow_schema.json
@@ -372,19 +372,7 @@
                     "type": "string",
                     "default": "all",
                     "description": "The NCBI taxonomic groups to download. Options include 'all', 'archaea', 'bacteria', 'fungi', 'invertebrate', 'metagenomes', 'plant', 'protozoa', 'vertebrate_mammalian', 'vertebrate_other', and 'viral'. A comma-separated list is also valid (e.g., 'bacteria,viral').",
-                    "enum": [
-                        "all",
-                        "archaea",
-                        "bacteria",
-                        "fungi",
-                        "invertebrate",
-                        "metagenomes",
-                        "plant",
-                        "protozoa",
-                        "vertebrate_mammalian",
-                        "vertebrate_other",
-                        "viral"
-                    ]
+                    "pattern": "^(?:[all|archaea|bacteria|fungi|invertebrate|metagenomes|plant|protozoa|vertebrate_mammalian|vertebrate_other|viral]+(?:,[all|archaea|bacteria|fungi|invertebrate|metagenomes|plant|protozoa|vertebrate_mammalian|vertebrate_other|viral]+)*)?$"
                 },
                 "ncbidownload_section": {
                     "type": "string",