diff --git a/CHANGELOG.md b/CHANGELOG.md index 2d45709d..ff13f813 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -19,6 +19,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. ### Fixed +* Missing `strip-components` in `download-references.nf/star-fusion` [#148](https://github.com/nf-core/rnafusion/issues/148) * Missing version prefix for cdna [#143](https://github.com/nf-core/rnafusion/issues/143) * `samtools` missing header in empty file for FusionInspector [ref](https://github.com/STAR-Fusion/STAR-Fusion/issues/191) * Removed `profile` from helper scripts [#139](https://github.com/nf-core/rnafusion/issues/139) diff --git a/download-references.nf b/download-references.nf index f6509338..c9545338 100644 --- a/download-references.nf +++ b/download-references.nf @@ -135,7 +135,7 @@ process download_star_fusion { script: """ aws s3 --no-sign-request --region ${params.awsregion} cp s3://ngi-igenomes/Homo_sapiens/Ensembl/GRCh38/Genome/CTAT/ctat_star_fusion_1_8_1.tar.gz . - tar -xf ctat_star_fusion_1_8_1.tar.gz + tar -xf ctat_star_fusion_1_8_1.tar.gz --strip-components=5 rm ctat_star_fusion_1_8_1.tar.gz """ }