iGenomes currently not optional, but deactivated by default

[marchoeppner]

Currently, the pipeline deactivates iGenomes by default; but it expects the "params.genomes" to be set, for example here:

rnafusion/main.nf

Line 87 in d4a622c

params.fasta = params.genome ? params.genomes[ params.genome ].fasta ?: false : false

I suppose this should be put into a condition , to also allow setting params.fasta and params.gtf from outside the pipeline.

[matq007]

Ah, you are right! Good point, I will fix this in next version. Thank you for the catch 👍

[matq007]

Solved. The upcoming version will only support Ensembl version as was discussed on Slack channel.