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nf-core/rnaseq version 1.1
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@ewels ewels released this 05 Oct 22:20
· 4683 commits to master since this release
1.1
1cd5ab7
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Learn about vigilant mode.

Pipeline updates

  • Wrote docs and made minor tweaks to the --skip_qc and associated options
  • Removed the depreciated uppmax-modules config profile
  • Updated the hebbe config profile to use the new withName syntax too
  • Use new workflow.manifest variables in the pipeline script
  • Updated minimum nextflow version to 0.32.0

Software updates

  • FastQC 0.11.7 > 0.11.8
  • STAR 2.6.1a > 2.6.1b
  • Picard 2.18.11 > 2.18.14
  • Deeptools 3.1.1 > 3.1.4

Bug Fixes

  • #77: Added back executor = 'local' for the workflow_summary_mqc
  • #95: Check if task.memory is false instead of null
  • #97: Resolved edge-case where numeric sample IDs are parsed as numbers causing some samples to be incorrectly overwritten.
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