diff --git a/conf/modules.config b/conf/modules.config index ec0df0c035..a735a8b47d 100644 --- a/conf/modules.config +++ b/conf/modules.config @@ -347,7 +347,7 @@ process { publishDir = [ enabled: false ] } - withName: 'BGZIPTABIX_ANNOTATE' { + withName: 'ANNOTATION_BGZIPTABIX' { publishDir = [ path: { "${params.outdir}/annotation/${meta.id}" }, enabled: true, @@ -359,7 +359,7 @@ process { if ((params.tools) && (params.tools.contains('snpeff') || params.tools.contains('merge'))) { process { - withName: 'NFCORE_SAREK:SAREK:ANNOTATE:SNPEFF_ANNOTATE:BGZIPTABIX_ANNOTATE' { + withName: 'NFCORE_SAREK:SAREK:ANNOTATE:ANNOTATION_SNPEFF:ANNOTATION_BGZIPTABIX' { ext.prefix = {"${meta.id}_snpEff.ann.vcf"} } } @@ -367,7 +367,7 @@ if ((params.tools) && (params.tools.contains('snpeff') || params.tools.contains( if ((params.tools) && (params.tools.contains('vep'))) { process { - withName: 'NFCORE_SAREK:SAREK:ANNOTATE:ENSEMBLVEP_ANNOTATE:BGZIPTABIX_ANNOTATE' { + withName: 'NFCORE_SAREK:SAREK:ANNOTATE:ANNOTATION_ENSEMBLVEP:ANNOTATION_BGZIPTABIX' { ext.prefix = {"${meta.id}_VEP.ann.vcf"} } } @@ -375,7 +375,7 @@ if ((params.tools) && (params.tools.contains('vep'))) { if ((params.tools) && (params.tools.contains('merge'))) { process { - withName: 'NFCORE_SAREK:SAREK:ANNOTATE:MERGE_ANNOTATE:BGZIPTABIX_ANNOTATE' { + withName: 'NFCORE_SAREK:SAREK:ANNOTATE:MERGE_ANNOTATE:ANNOTATION_BGZIPTABIX' { ext.prefix = {"${meta.id}_snpEff_VEP.ann.vcf"} } }