From 5061cbcf160f3c9c4103d84c45ef58d642d69da3 Mon Sep 17 00:00:00 2001
From: Rike <friederike.hanssen@qbic.uni-tuebingen.de>
Date: Wed, 8 Dec 2021 20:43:25 +0100
Subject: [PATCH] update config with changed module and sw names

---
 conf/modules.config | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/conf/modules.config b/conf/modules.config
index ec0df0c035..a735a8b47d 100644
--- a/conf/modules.config
+++ b/conf/modules.config
@@ -347,7 +347,7 @@ process {
         publishDir        = [ enabled: false ]
     }
 
-    withName: 'BGZIPTABIX_ANNOTATE' {
+    withName: 'ANNOTATION_BGZIPTABIX' {
         publishDir       = [
                 path: { "${params.outdir}/annotation/${meta.id}" },
                 enabled: true,
@@ -359,7 +359,7 @@ process {
 
 if ((params.tools) && (params.tools.contains('snpeff') || params.tools.contains('merge'))) {
     process {
-        withName: 'NFCORE_SAREK:SAREK:ANNOTATE:SNPEFF_ANNOTATE:BGZIPTABIX_ANNOTATE' {
+        withName: 'NFCORE_SAREK:SAREK:ANNOTATE:ANNOTATION_SNPEFF:ANNOTATION_BGZIPTABIX' {
             ext.prefix = {"${meta.id}_snpEff.ann.vcf"}
         }
     }
@@ -367,7 +367,7 @@ if ((params.tools) && (params.tools.contains('snpeff') || params.tools.contains(
 
 if ((params.tools) && (params.tools.contains('vep'))) {
     process {
-        withName: 'NFCORE_SAREK:SAREK:ANNOTATE:ENSEMBLVEP_ANNOTATE:BGZIPTABIX_ANNOTATE' {
+        withName: 'NFCORE_SAREK:SAREK:ANNOTATE:ANNOTATION_ENSEMBLVEP:ANNOTATION_BGZIPTABIX' {
             ext.prefix = {"${meta.id}_VEP.ann.vcf"}
         }
     }
@@ -375,7 +375,7 @@ if ((params.tools) && (params.tools.contains('vep'))) {
 
 if ((params.tools) && (params.tools.contains('merge'))) {
     process {
-        withName: 'NFCORE_SAREK:SAREK:ANNOTATE:MERGE_ANNOTATE:BGZIPTABIX_ANNOTATE' {
+        withName: 'NFCORE_SAREK:SAREK:ANNOTATE:MERGE_ANNOTATE:ANNOTATION_BGZIPTABIX' {
             ext.prefix = {"${meta.id}_snpEff_VEP.ann.vcf"}
         }
     }