From d0d1fdbefc1e518841fde79cef532f8a055eedd1 Mon Sep 17 00:00:00 2001 From: Rike Date: Wed, 15 Nov 2023 22:20:04 +0100 Subject: [PATCH 1/3] back to dev --- CHANGELOG.md | 20 ++++++++++++++++++++ assets/multiqc_config.yml | 4 ++-- nextflow.config | 2 +- 3 files changed, 23 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index b686bd5ed..d03e2fd65 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -5,6 +5,26 @@ All notable changes to this project will be documented in this file. The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). +## [dev] + +### Added + +### Changed + +### Fixed + +### Removed + +### Dependencies + +| Dependency | Old version | New version | +| ---------- | ----------- | ----------- | + +### Modules / Subworkflows + +| script | Old name | New name | +| ----------------------------- | ----------------------------- | ----------------------------- | + ## [3.4.0](https://github.com/nf-core/sarek/releases/tag/3.4.0) - Pårtetjåkko Pårtetjåkko is a mountain in the south of the park. diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml index e175753b6..42adcc920 100644 --- a/assets/multiqc_config.yml +++ b/assets/multiqc_config.yml @@ -3,9 +3,9 @@ custom_logo_url: https://github.com/nf-core/sarek/ custom_logo_title: "nf-core/sarek" report_comment: > - This report has been generated by the nf-core/sarek + This report has been generated by the nf-core/sarek analysis pipeline. For information about how to interpret these results, please see the - documentation. + documentation. report_section_order: "nf-core-sarek-methods-description": order: -1000 diff --git a/nextflow.config b/nextflow.config index cc1bdcbd4..092662fb2 100644 --- a/nextflow.config +++ b/nextflow.config @@ -350,7 +350,7 @@ manifest { description = """An open-source analysis pipeline to detect germline or somatic variants from whole genome or targeted sequencing""" mainScript = 'main.nf' nextflowVersion = '!>=23.04.0' - version = '3.4.0' + version = '3.5dev' doi = '10.12688/f1000research.16665.2, 10.1101/2023.07.19.549462, 10.5281/zenodo.3476425' } From 81791c5e05519af3dfa71e967a3050008066b97d Mon Sep 17 00:00:00 2001 From: Rike Date: Wed, 15 Nov 2023 22:22:23 +0100 Subject: [PATCH 2/3] update changelog --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index d03e2fd65..dacbc4b3b 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -9,6 +9,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### Added +- [#1333](https://github.com/nf-core/sarek/pull/1333) - Back to dev + ### Changed ### Fixed From e88c529864f48c5b8e863e5100da17bf29c807ba Mon Sep 17 00:00:00 2001 From: nf-core-bot Date: Wed, 15 Nov 2023 22:05:17 +0000 Subject: [PATCH 3/3] [automated] Fix linting with Prettier --- CHANGELOG.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index dacbc4b3b..2c8151a55 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -24,8 +24,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### Modules / Subworkflows -| script | Old name | New name | -| ----------------------------- | ----------------------------- | ----------------------------- | +| script | Old name | New name | +| ------ | -------- | -------- | ## [3.4.0](https://github.com/nf-core/sarek/releases/tag/3.4.0) - Pårtetjåkko