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Control-FREEC restart is flaky #225

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szilvajuhos opened this issue Jul 2, 2020 · 1 comment
Closed

Control-FREEC restart is flaky #225

szilvajuhos opened this issue Jul 2, 2020 · 1 comment
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@szilvajuhos
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 $ nextflow run nf-core/sarek -r dev -profile munin --step Control-FREEC --input sample.tsv 
N E X T F L O W  ~  version 20.04.1
Launching `nf-core/sarek` [crazy_bardeen] - revision: 2e39582d29 [dev]
WARN: Unknown parameter: c
Unknown tool(s), see --help for more information
$ cat sample.tsv
subject        XY      0       normal      /path/to/normal.pileup
subject        XY      1       tumor       /path/to/tumor.pileup
@maxulysse
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Thanks for the issue, can you send me the path to your TSV file, so I can check on munin?

@maxulysse maxulysse self-assigned this Jul 13, 2020
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