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vcf to maf conversion #785

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kunstner opened this issue Oct 11, 2022 · 2 comments
Open

vcf to maf conversion #785

kunstner opened this issue Oct 11, 2022 · 2 comments
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enhancement New feature or request

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@kunstner
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Description of feature

Hi,

I was wondering whether it is possible to integrate vcf2maf as well into sarek to directly convert annotated vcf files to maf.

https://github.com/mskcc/vcf2maf

Best,
Axel
@kunstner kunstner added the enhancement New feature or request label Oct 11, 2022
@FriederikeHanssen
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Yes we have talked about it quite a bit. However, before we do that we need to find a solution for snpeff annotated files and the merged ones. vcf2maf only works for VEP.

@kunstner
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Many thanks for the quick reply. Right, the conversion is VEP only. I've forgotten that issue.

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@kunstner @FriederikeHanssen