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Make the filtering step in the haplotype_single_sample track skippable #876

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FriederikeHanssen opened this issue Nov 30, 2022 · 0 comments
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Make the filtering step in the haplotype_single_sample track skippable #876

FriederikeHanssen opened this issue Nov 30, 2022 · 0 comments
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enhancement New feature or request

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@FriederikeHanssen
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Description of feature

For some use cases, it would be useful to skip the filtering following Haplotypecaller in the single sample mode:

https://nfcore.slack.com/archives/CGFUX04HZ/p1669759507612189?thread_ts=1665054217.962299&cid=CGFUX04HZ
https://nfcore.slack.com/archives/CGFUX04HZ/p1668784847234849
@FriederikeHanssen FriederikeHanssen added the enhancement New feature or request label Nov 30, 2022
@maxulysse maxulysse mentioned this issue Dec 9, 2022
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@maxulysse @FriederikeHanssen