json schema does not validate --tools and --skip_tools

[maxulysse]

Description of the bug

nextflow run nf-core/sarek --profile test,docker --tools strelka2

should fail, but isn't

Command used and terminal output

No response

Relevant files

No response

System information

No response

[asp8200]

I confirm the error. A cmd like

nextflow run nf-core/sarek -r 3.1.1 -profile test,singularity --tools foo --skip_tools bar

doesn't cause the pipeline to an early exit, instead:

Main options
  [...]
  tools                     : foo
  skip_tools                : bar

[maxulysse]

Do you think we can tests for failure in pytest?
I realize there are many expected failures that we should test...
Looking forward to test all that in nf-test

[FriederikeHanssen]

weird, do you know why? I thought everything is validated by default....

[maxulysse]

And I'm pretty sure this used to work

[asp8200]

And I'm pretty sure this used to work

I - incidentally - tested it on Sarek 2.7, and it worked there.