From 95c4f44b88b7cdf1f419c0641af3d57b22de3fe9 Mon Sep 17 00:00:00 2001 From: maxulysse Date: Thu, 1 Jun 2023 16:46:05 +0200 Subject: [PATCH 1/2] use biocontainer provided container --- conf/public_aws_ecr.config | 3 --- 1 file changed, 3 deletions(-) diff --git a/conf/public_aws_ecr.config b/conf/public_aws_ecr.config index fb347256f9..a1445ebed8 100644 --- a/conf/public_aws_ecr.config +++ b/conf/public_aws_ecr.config @@ -54,7 +54,4 @@ process { withName: 'UNZIP' { container = 'quay.io/biocontainers/p7zip:16.02' } - withName: 'VCFTOOLS' { - container = 'public.ecr.aws/biocontainers/vcftools:0.1.16--pl5321hd03093a_7' - } } From ff45cfb3faa41ac167cdd7a4c333d4437bcac4b3 Mon Sep 17 00:00:00 2001 From: maxulysse Date: Thu, 1 Jun 2023 16:48:01 +0200 Subject: [PATCH 2/2] update CHANGELOG --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index dfea95606e..906839b0d2 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -71,6 +71,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - [#1043](https://github.com/nf-core/sarek/pull/1043) - Fix typo in the tags.yml files from [#978](https://github.com/nf-core/sarek/pull/978) - [#1048](https://github.com/nf-core/sarek/pull/1048) - Skip tool validation on annotation to fix [#949](https://github.com/nf-core/sarek/issues/949), check that bam is bam and cram is cram [#895](https://github.com/nf-core/sarek/issues/895) - [#1050](https://github.com/nf-core/sarek/pull/1050) - Disable GATK VCF filters when joint calling to fix [#1025](https://github.com/nf-core/sarek/issues/1025) +- [#1058](https://github.com/nf-core/sarek/pull/1058) - Fix container declaration for VCFTOOLS as it has been updated in the registry ### Removed