From d2451acd3980d3557aa77e7786dee19aac37f1d9 Mon Sep 17 00:00:00 2001 From: Maxime U Garcia Date: Thu, 13 Jul 2023 16:21:38 +0200 Subject: [PATCH 1/2] Restore proper rendering in usage.md --- docs/usage.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/docs/usage.md b/docs/usage.md index b0f7b080f9..b807523ba1 100644 --- a/docs/usage.md +++ b/docs/usage.md @@ -2,6 +2,8 @@ ## :warning: Please read this documentation on the nf-core website: [https://nf-co.re/sarek/usage](https://nf-co.re/sarek/usage) +> _Documentation of pipeline parameters is generated automatically from the pipeline schema and can no longer be found in markdown files._ + # Introduction Sarek is a workflow designed to detect germline and somatic variants on whole genome, whole exome, or targeted sequencing data. From 58f1ffd22f7985db02b909801bd4f49f1b2f9ee7 Mon Sep 17 00:00:00 2001 From: Maxime U Garcia Date: Thu, 13 Jul 2023 16:22:58 +0200 Subject: [PATCH 2/2] Update CHANGELOG.md --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index cd99af18d7..7c8bf46d19 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -22,6 +22,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - [#1143](https://github.com/nf-core/sarek/pull/1143) - `snpeff_db` is now a string - [#1145](https://github.com/nf-core/sarek/pull/1145) - Fixed Zenodo links in `README.md` and in `WorkflowMain.groovy` - [#1149](https://github.com/nf-core/sarek/pull/1149) - Update `Manta` modules and fix usage of `--exome` flag +- [#1155](https://github.com/nf-core/sarek/pull/1155) - Restore proper rendering in `usage.md` ## [3.2.3](https://github.com/nf-core/sarek/releases/tag/3.2.3) - Gällivare