From 8b284a2e12b88af8731492cd9960745a1bd6ce83 Mon Sep 17 00:00:00 2001 From: JohannesKersting Date: Fri, 25 Aug 2023 12:11:02 +0200 Subject: [PATCH 1/2] added missing output documentation for ASCATprofile.png --- docs/output.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/docs/output.md b/docs/output.md index a39a728018..9f90bac28c 100644 --- a/docs/output.md +++ b/docs/output.md @@ -598,6 +598,8 @@ This is done internally using the software [AlleleCount](https://github.com/canc **Output directory: `{outdir}/variantcalling/ascat//`** +- `.tumour.ASCATprofile.png` + - image with information about allele-specific copy number profile - `.tumour.ASPCF.png` - image with information about allele-specific copy number segmentation - `.before_correction_Tumour..tumour.png` From 21dbabd72ac379c2241cd8c4423a68fecfaa68d3 Mon Sep 17 00:00:00 2001 From: JohannesKersting Date: Fri, 25 Aug 2023 13:52:57 +0200 Subject: [PATCH 2/2] updated CHANGELOG.md --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 8c794ad696..7d5c8c88ff 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -46,6 +46,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - [#1177](https://github.com/nf-core/sarek/pull/1177) - Fix status inference when using nf-validation plugin - [#1183](https://github.com/nf-core/sarek/pull/1183) - Add docs for concatentated germline variants - [#1184](https://github.com/nf-core/sarek/pull/1184) - Fix issue with duplicated variants in VCF from Sentieon-based joint-germline variant-calling with VQSR. (Corresponding to [#966](https://github.com/nf-core/sarek/issues/966) for GATK.) +- [#1192](https://github.com/nf-core/sarek/pull/1192) - Add `ASCATprofile.png` to ASCAT output docs ### Dependencies