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Updating samtools #1408

Merged
merged 17 commits into from
Feb 16, 2024
Merged

Updating samtools #1408

merged 17 commits into from
Feb 16, 2024

Commits on Feb 15, 2024

  1. updating to samtools v1.19.2 in SAMTOOLS_VIEW

    @asp8200
    asp8200 committed Feb 15, 2024
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  2. updating to samtools v1.19.2 in SAMTOOLS_STATS

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    asp8200 committed Feb 15, 2024
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  3. updating to samtools v1.19.2 in samtools mpileup

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    asp8200 committed Feb 15, 2024
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  4. Merge branch 'dev' into update_samtools

    @asp8200
    asp8200 committed Feb 15, 2024
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  5. Updating nf-module with samtools-view

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    asp8200 committed Feb 15, 2024
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  6. Temporarily exclude nf-test of samtools/mpileup

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    asp8200 committed Feb 15, 2024
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  7. updating to samtools v1.19.2 in samtools merge module

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    asp8200 committed Feb 15, 2024
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Commits on Feb 16, 2024

  1. updating to samtools v1.19.2 in samtools index module

    @asp8200
    asp8200 committed Feb 16, 2024
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  2. updating to samtools v1.19.2 in samtools faidx module

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    asp8200 committed Feb 16, 2024
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  3. updating to samtools v1.19.2 in samtools convert module

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    asp8200 committed Feb 16, 2024
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  4. Adding meta to input channels fasta and fai for calls to SAMTOOLS_CON… 

    …VERT
    @asp8200
    asp8200 committed Feb 16, 2024
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  5. updating to samtools v1.19.2 in samtools collatefastq module

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    asp8200 committed Feb 16, 2024
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  6. updating to samtools v1.19.2 in samtools bam2fq module

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    asp8200 committed Feb 16, 2024
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  7. Merge branch 'dev' into update_samtools

    @asp8200
    asp8200 committed Feb 16, 2024
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  8. Updating changelog

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    asp8200 committed Feb 16, 2024
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  9. Update CHANGELOG.md 

    Co-authored-by: Maxime U Garcia <maxime.garcia@scilifelab.se>
    @asp8200 @maxulysse
    asp8200 and maxulysse authored Feb 16, 2024
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  10. Adding samtools-update to Dependencies table

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    asp8200 committed Feb 16, 2024
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