From 9a4615a348e655c6c69932d44f5090df03e93961 Mon Sep 17 00:00:00 2001 From: maxulysse Date: Tue, 30 Apr 2024 16:08:48 +0200 Subject: [PATCH 1/3] feat(wave): add wave profile --- nextflow.config | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/nextflow.config b/nextflow.config index e32da2cb94..0a49ab49c8 100644 --- a/nextflow.config +++ b/nextflow.config @@ -247,6 +247,12 @@ profiles { shifter.enabled = false singularity.enabled = false } + wave { + singularity.ociAutoPull = true + wave.enabled = true + wave.freeze = true + wave.strategy = 'conda,container' + } gitpod { executor.cpus = 4 executor.memory = 8.GB From 4a6f602eb3df58d37b36d73cb8c3f4107e079480 Mon Sep 17 00:00:00 2001 From: maxulysse Date: Tue, 30 Apr 2024 16:11:09 +0200 Subject: [PATCH 2/3] update CHANGELOG --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index fe9a52fb8e..4959461be9 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -10,6 +10,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### Added - [#1489](https://github.com/nf-core/sarek/pull/1489) - Added a `testdata.nf-core.sarek` key in `conf/igenomes.config` for small reference +- [#1493](https://github.com/nf-core/sarek/pull/1493) - Added a `wave` profile ### Changed From 8b8be842c5bb61dee16a6970c11cc2c74c340a06 Mon Sep 17 00:00:00 2001 From: Maxime U Garcia Date: Tue, 30 Apr 2024 17:43:45 +0200 Subject: [PATCH 3/3] Update nextflow.config --- nextflow.config | 1 + 1 file changed, 1 insertion(+) diff --git a/nextflow.config b/nextflow.config index 0a49ab49c8..dfe46747a6 100644 --- a/nextflow.config +++ b/nextflow.config @@ -248,6 +248,7 @@ profiles { singularity.enabled = false } wave { + apptainer.ociAutoPull = true singularity.ociAutoPull = true wave.enabled = true wave.freeze = true