From 4422667389aeb4209fa77ce2eb2ad568a20a82d1 Mon Sep 17 00:00:00 2001
From: FriederikeHanssen <friederike.hanssen@qbic.uni-tuebingen.de>
Date: Mon, 22 Jun 2020 11:34:10 +0200
Subject: [PATCH] Replace tmp_dir directory in BaseRecalibration

---
 main.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/main.nf b/main.nf
index 280153f35e..2b2c828a1d 100644
--- a/main.nf
+++ b/main.nf
@@ -1571,7 +1571,7 @@ process BaseRecalibrator {
         BaseRecalibrator \
         -I ${bam} \
         -O ${prefix}${idSample}.recal.table \
-        --tmp-dir /tmp \
+        --tmp-dir . \
         -R ${fasta} \
         ${intervalsOptions} \
         ${dbsnpOptions} \