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feat: update CHANGELOG #383

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May 27, 2021
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feat: update CHANGELOG #383

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feat: update CHANGELOG
maxulysse May 27, 2021
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feat: update CHANGELOG
maxulysse May 27, 2021
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14 changes: 12 additions & 2 deletions CHANGELOG.md
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Expand Up @@ -9,18 +9,28 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

### Added

- [#353](https://github.com/nf-core/sarek/pull/353) - Add support for task retries with exit code 247 (exhibited by Picard MarkDuplicates)
- [#353](https://github.com/nf-core/sarek/pull/353) - Add support for task retries with exit code 247 (exhibited by `Picard MarkDuplicates`)
- [#354](https://github.com/nf-core/sarek/pull/354) - Add tumor only mode for `Mutect2` and `MSIsensor`
- [#356](https://github.com/nf-core/sarek/pull/356) - Add `--cf_contamination_adjustment` params to adjust contamination with `Control-FREEC`
- [#372](https://github.com/nf-core/sarek/pull/372) - Add `--cf_contamination` params to specify contamination value with `Control-FREEC`

### Changed

- [#333](https://github.com/nf-core/sarek/pull/333) - Bump `Sarek` version to `3.0dev`
- [#373](https://github.com/nf-core/sarek/pull/373) - Sync `TEMPLATE` with `tools` 1.14
- [#376](https://github.com/nf-core/sarek/pull/376) - Better logo on Github dark Mode
- [#383](https://github.com/nf-core/sarek/pull/383) - Update CHANGELOG

### Fixed

- [#375](https://github.com/nf-core/sarek/pull/375), [#381](https://github.com/nf-core/sarek/pull/381), [#382](https://github.com/nf-core/sarek/pull/382) - Fix bugs due to `TEMPLATE` sync from [#373](https://github.com/nf-core/sarek/pull/373)
- [#378](https://github.com/nf-core/sarek/pull/378) - Fix `Spark` related issue due to `Docker` settings in `nextflow.config`

### Deprecated

### Removed

- [#368](https://github.com/nf-core/sarek/pull/368) - Remove social preview image to use GitHub OpenGraph

## [2.7](https://github.com/nf-core/sarek/releases/tag/2.7) - Pårte

Pårte is one of the main massif in the Sarek National Park.
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